eDNAjoint 0.3

User-facing changes

• Changed function names to snakemake (i.e., jointModel() to joint_model())
• Changed function arguments to snakemake (i.e., n.chain to n_chain)
• Changed input data names to snakemake (i.e., qPCR.N to pcr_n)
• Changed MCMC sampling arguments so the n_iter includes all MCMC iterations, including the number of warm-up iterations specified in n_warmup. Changed default values accordingly.

Non-user facing changes

• Collapsed Stan files with more conditional statements to accommodate more model variations within one file
• Added Stan helper functions
• Moved joint_model and traditional_model helper functions to new files
• Linted package to match default lintr style
• Updated compilation flags to allow installation from source on Windows RStudio

eDNAjoint 0.2

• Package source code now hosted at https://github.com/ropensci/eDNAjoint
• Improved programming (i.e., reduced cyclomatic complexity, spacing, etc.)
• Added functionality to accommodate semi-paired data (i.e., traditional samples not collected at all surveyed sites).
• Improved integration of package print statements with user guide.
• Updated default calculation of initial values for MCMC.

eDNAjoint 0.1

• Initial version of the package on GitHub.