do3PCA: Probabilistic Phylogenetic Principal Component Analysis
Estimates probabilistic phylogenetic Principal Component Analysis (PCA) and non-phylogenetic probabilistic PCA. Provides methods to implement alternative models of trait evolution including Brownian motion (BM), Ornstein-Uhlenbeck (OU), Early Burst (EB), and Pagel's lambda. Also provides flexible biplot functions.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0), Rdimtools |
| Imports: | ape, phytools, matrixcalc, mclust, nloptr, ratematrix, stats, utils |
| Published: | 2024-09-24 |
| DOI: | 10.32614/CRAN.package.do3PCA |
| Author: | Daniel Caetano 
[aut, cre] |
| Maintainer: | Daniel Caetano <caetanods1 at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)] |
| NeedsCompilation: | no |
| In views: | Phylogenetics |
| CRAN checks: | do3PCA results |
Documentation:
| Reference manual: | do3PCA.pdf |
Downloads:
| Package source: | do3PCA_1.0.0.tar.gz |
| Windows binaries: | r-devel: do3PCA_1.0.0.zip, r-release: do3PCA_1.0.0.zip, r-oldrel: do3PCA_1.0.0.zip |
| macOS binaries: | r-release (arm64): do3PCA_1.0.0.tgz, r-oldrel (arm64): do3PCA_1.0.0.tgz, r-release (x86_64): do3PCA_1.0.0.tgz, r-oldrel (x86_64): do3PCA_1.0.0.tgz |
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