## ----include=FALSE------------------------------------------------------------ knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) # reduce the minimum number of characters for the tibble column titles (default: 15) options(pillar.min_title_chars = 10) ## ----install-package, eval=FALSE---------------------------------------------- # install.packages("clustermole") ## ----load-package, message=FALSE---------------------------------------------- library(clustermole) ## ----markers------------------------------------------------------------------ markers <- clustermole_markers(species = "hs") markers ## ----celltypes-list----------------------------------------------------------- markers_list <- split(x = markers$gene, f = markers$celltype_full) ## ----overlaps, eval=FALSE----------------------------------------------------- # my_overlaps <- clustermole_overlaps(genes = my_genes_vec, species = "hs") ## ----enrichment, eval=FALSE--------------------------------------------------- # my_enrichment <- clustermole_enrichment(expr_mat = my_expr_mat, species = "hs")