| Type: | Package |
| Title: | Ready-to-Use Curated Gene Sets for 'cinaR' |
| Version: | 0.1.1 |
| Description: | Immune related gene sets provided along with the 'cinaR' package. |
| License: | GPL-3 |
| Encoding: | UTF-8 |
| LazyData: | true |
| URL: | https://github.com/eonurk/cinaR-genesets |
| BugReports: | https://github.com/eonurk/cinaR-genesets/issues/ |
| Depends: | R (≥ 3.5.0) |
| RoxygenNote: | 7.1.1 |
| NeedsCompilation: | no |
| Packaged: | 2021-01-20 18:04:39 UTC; karako |
| Author: | Onur Karakaslar [aut, cre],
Duygu Ucar  [aut] |
| Maintainer: | Onur Karakaslar <eonurkara@gmail.com> |
| Repository: | CRAN |
| Date/Publication: | 2021-01-22 10:40:09 UTC |
PBMC scRNAseq modules
Description
PBMC scRNAseq modules
Usage
data(PBMC.scRNAseq)
Format
An object of class GMT; see read.gmt from qusage package.
References
Márquez et al., 2020; Nehar-Belaid et al., 2020 doi: 10.1038/s41590-020-0743-0 doi: 10.1038/s41467-020-14396-9
Dice Major
Description
Dice Major
Usage
data(dice.major)
Format
An object of class GMT; see read.gmt from qusage package.
References
Schmiedel et al. (2018) Immunity 175:1701-1715 (doi: 10.1016/j.cell.2018.10.022)
Immune modules
Description
Immune modules
Usage
data(VP2008)
Format
An object of class GMT; see read.gmt from qusage package.
References
Chaussabel et al. (2008) Immunity 29:150-164 (PubMed)
Wikipathways
Description
Wikipathways
Usage
data(wiki)
Format
An object of class GMT; see read.gmt from qusage package.
References
Pico et al. (2008) PLOS Biology (doi: 10.1371/journal.pbio.0060184)
Wikipathways inflammation
Description
Wikipathways inflammation
Usage
data(wiki.inf)
Format
An object of class GMT; see read.gmt from qusage package.
References
Pico et al. (2008) PLOS Biology (doi: 10.1371/journal.pbio.0060184)