************************************************************************ version 2.0.7 Author: Luigi Augugliaro data: 2024-02-10 * function select.cglasso was renamed select_cglasso ************************************************************************ version 2.0.6 Author: Luigi Augugliaro data: 2023-01-17 * added citation to Journal of Statistical Software * fixed bug in plot.cglasso2igraph ************************************************************************ version 2.0.5 Author: Luigi Augugliaro data: 2022-05-16 * bug fixed in summary.cglasso * bug fixed in select.cglasso ************************************************************************ version 2.0.4 Author: Luigi Augugliaro data: 2021-04-09 * bug fixed in cglasso: function 'deparse1' was replaced with function 'flmTerms' (deparse1 is not available in R < 4.0.0) * bug fixed in cglasso function related to the model.frame ************************************************************************ version 2.0.3 Author: Luigi Augugliaro Gianluca Sottile data: 2021-03-31 * fixed NAMESPACE * added dataset 'Example' * 'cglasso' function has been updated to handle 'formula' object * 'summary.datacggm' has been updated to handle categorical predictors * 'ColVars' has been updated to handle categorical predictors * 'ColNames' has been updated to handle categorical predictors * 'datacggm' has been updated to accept categorical predictors * added function 'formula2datacggm' * 'nPred' function has been replaced with the method function 'npred.datacggm' * 'nReps' function has been replaced with the method function 'nresp.datacggm' * 'nObs' function has been replaced with the method function 'nobs.datacggm' * added generic functions 'nreps' and 'npred' * 'bic' function has been replaced with the method function 'BIC.cglasso' * 'aic' function has been replaced with the method function 'AIC.cglasso' * function 'plot.cglasso' has been updated in order to set the directory used to save the resulting plots * function 'hist.datacggm' has been updated in order to set the directory used to save the resulting plots * function 'qqcnorm' has been updated in order to set the directory used to save the resulting plots * method functions are no longer exported * bugs fixed in 'print.datacggm' * bugs fixed in 'print.cggm' ************************************************************************ version 2.0.2 Author: Luigi Augugliaro data: 2021-01-11 * bugs fixed in 'ShowStructure' ************************************************************************ version 2.0.1 data: 2021-01-08 Author: Luigi Augugliaro * bugs fixed: * 1. mismach declaration in 'subglasso.f90' * 2. mismach declaration in 'cglasso_v1.f90' * 3. mismach declaration in 'cggm_v1.f90' * 4. subscript out of bounds in 'select.cglasso' ************************************************************************ version 2.0.0 data: 2020-09-21 Author: Luigi Augugliaro Gianluca Sottile * added dataset MM * bic function was generalized to handle the extended BIC criterion * added functions nobs, nresp, npred * added function select.cglasso * functions cglasso.cggm was updated to fit conditional GGM to fully observed datasets. * added function getGraph * added function is.cglasso2igraph * function plot.cglasso2igraph was updated to handle models with predictors * added function 'print.cglasso2igraph' * function 'to_graph' was updated to handle conditioned Gaussian graphical models * function 'rcggm' was updated in order to simulate samples with missing-at-random response values * added function 'residuals' for objects of class 'cglasso' and 'cggm' * added function 'fitted' for objects of class 'cglasso' and 'cggm' * function 'mle' was renamed 'cggm' * added function 'impute' for missing data imputation * added method function 'predict.cglasso' * function 'summary.cglasso' was updated in order to handle the output from cglasso function * functions 'QFun', 'print.QFun', 'aic', 'bic', 'print.GoF' and 'plot.GoF' were updated in order to handle the output from cglasso function * Title was changed in order to be coherent with the new class of graphical models * function 'cglasso' was updated in order to handle the objects of class 'datacggm' * added functions 'ColMeans' and 'ColVars' * added function 'ShowStructure' * added functions 'lower' and 'upper' * added function 'getMatrix' * removed functions 'mglasso' and 'glasso' * removed method function 'as.matrix.datacggm' * removed method function 'scale.datacggm' * functions 'datacggm', 'rcggm', 'dim.datacggm', 'dimnames.datacggm', 'event' 'print.datacggm' and 'summary.datacggm' were updated in order to handle the dataset from conditional censored gaussian graphical models * added method function 'print.summary.datacggm' * added class 'summary.datacggm' * added methods functions 'hist.datacggm' and 'plot.datacggm' * added 'conditional cglasso model' * added 'conditional graphical lasso model' * added 'multilasso' algorithm ************************************************************************ ************************************************************************ version 1.1.0 data: 2018-09-19 Author: Luigi Augugliaro * bug fixed in 'parini' * bug fixed in ‘summary.datacggm’ * bug fixed in 'glasso_bcd' when pendiag = TRUE * added dataset 'MKMEP' * added argument 'pendiag' to the function 'cglasso' * added method function 'scale.datacggm' * added check in 'datacggm' * added missglasso model and corresponding method functions * defined new hierarchical structure: 'glasso < mglasso < cglasso' ************************************************************************