anndata: 'anndata' for R

A 'reticulate' wrapper for the Python package 'anndata'. Provides a scalable way of keeping track of data and learned annotations. Used to read from and write to the h5ad file format.

Depends: R (≥ 3.5.0)
Imports: assertthat, Matrix, methods, R6, reticulate (≥ 1.17)
Suggests: stats, testthat, knitr, rmarkdown
Published: 2023-03-17
DOI: 10.32614/CRAN.package.anndata
Author: Philipp Angerer ORCID iD [ccp] (flying-sheep), Alex Wolf ORCID iD [ccp] (falexwolf), Isaac Virshup [ccp] (ivirshup), Sergei Rybakov [ccp] (Koncopd), Robrecht Cannoodt ORCID iD [aut, cre, cph] (rcannood)
Maintainer: Robrecht Cannoodt <rcannood at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: anndata results


Reference manual: anndata.pdf
Vignettes: Getting started
Demo with scanpy


Package source: anndata_0.7.5.6.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): anndata_0.7.5.6.tgz, r-oldrel (arm64): anndata_0.7.5.6.tgz, r-release (x86_64): anndata_0.7.5.6.tgz, r-oldrel (x86_64): anndata_0.7.5.6.tgz
Old sources: anndata archive

Reverse dependencies:

Reverse imports: singleCellTK
Reverse suggests: dyngen, SCORPIUS, zellkonverter


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