PubChemR: Interface to the 'PubChem' Database for Chemical Data Retrieval

Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types. Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.

Version: 2.1.4
Depends: R (≥ 3.6.0)
Imports: dplyr, tibble, magrittr, stringr, tidyr, RJSONIO, httr, utils, RCurl, magick, rsvg, png, testthat
Suggests: knitr, rmarkdown
Published: 2025-03-07
DOI: 10.32614/CRAN.package.PubChemR
Author: Selcuk Korkmaz ORCID iD [aut, cre], Bilge Eren Yamasan ORCID iD [aut], Dincer Goksuluk ORCID iD [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/selcukorkmaz/PubChemR
NeedsCompilation: no
CRAN checks: PubChemR results

Documentation:

Reference manual: PubChemR.pdf
Vignettes: Enhancing Chemical Data Access with PubChemR: A Guide to Utilizing PUG View Service (source, R code)
Accessing and Exploring Chemical Data with PubChemR: A Guide to PUG REST Service (source, R code)
Working with PubChemR to Access Chemical Data (source, R code)

Downloads:

Package source: PubChemR_2.1.4.tar.gz
Windows binaries: r-devel: PubChemR_2.1.4.zip, r-release: PubChemR_2.1.4.zip, r-oldrel: PubChemR_2.1.4.zip
macOS binaries: r-release (arm64): PubChemR_2.1.4.tgz, r-oldrel (arm64): PubChemR_2.1.4.tgz, r-release (x86_64): PubChemR_2.1.4.tgz, r-oldrel (x86_64): PubChemR_2.1.4.tgz
Old sources: PubChemR archive

Reverse dependencies:

Reverse imports: WayFindR

Linking:

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