DNAmotif: DNA Sequence Motifs

Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.

Version: 0.1.0
Imports: stats, Biostrings, Rcpp
LinkingTo: Rcpp
Published: 2024-06-04
DOI: 10.32614/CRAN.package.DNAmotif
Author: Subham Ghosh [aut, cre], UB Angadi [aut], Md Yeasin [aut], Dipro Sinha [aut], Saikath Das [aut]
Maintainer: Subham Ghosh <search4aghosh at gmail.com>
License: GPL-3
NeedsCompilation: yes
CRAN checks: DNAmotif results


Reference manual: DNAmotif.pdf


Package source: DNAmotif_0.1.0.tar.gz
Windows binaries: r-devel: DNAmotif_0.1.0.zip, r-release: DNAmotif_0.1.0.zip, r-oldrel: DNAmotif_0.1.0.zip
macOS binaries: r-release (arm64): DNAmotif_0.1.0.tgz, r-oldrel (arm64): DNAmotif_0.1.0.tgz, r-release (x86_64): DNAmotif_0.1.0.tgz, r-oldrel (x86_64): DNAmotif_0.1.0.tgz


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