Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.
Version: | 4.6.0 |
Depends: | R (≥ 4.2.0) |
Imports: | DDD (≥ 5.0), deSolve, doParallel, foreach, graphics, magrittr, Matrix, parallel, pracma, Rcpp (≥ 1.0.10), stats, subplex, tensor, testit, utils |
LinkingTo: | Rcpp (≥ 1.0.10), RcppEigen, BH (≥ 1.81.0-1) |
Suggests: | ape, covr, dplyr, future, future.apply, ggplot2, ggtree (≥ 3.0.0), gridExtra, knitr, phytools, purrr, rmarkdown, testthat (≥ 2.1.0), tibble, tidytree, tidyr |
Enhances: | doMC |
Published: | 2025-06-01 |
DOI: | 10.32614/CRAN.package.DAISIE |
Author: | Rampal S. Etienne |
Maintainer: | Rampal S. Etienne <r.s.etienne at rug.nl> |
BugReports: | https://github.com/rsetienne/DAISIE/issues |
License: | GPL (≥ 3) | file LICENSE |
Copyright: | See the file COPYRIGHTS for various DAISIE copyright details DAISIE copyright details |
URL: | https://github.com/rsetienne/DAISIE, https://rsetienne.github.io/DAISIE/ |
NeedsCompilation: | yes |
SystemRequirements: | C++17 |
Materials: | NEWS |
CRAN checks: | DAISIE results |
Reference manual: | DAISIE.pdf |
Vignettes: |
DAISIE FAQs (source) Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE (source, R code) Demo optimizing parameters (source, R code) Demo simulating islands (source, R code) DAISIE 'stac' values (source, R code) |
Package source: | DAISIE_4.6.0.tar.gz |
Windows binaries: | r-devel: DAISIE_4.5.0.zip, r-release: DAISIE_4.6.0.zip, r-oldrel: DAISIE_4.6.0.zip |
macOS binaries: | r-release (arm64): DAISIE_4.6.0.tgz, r-oldrel (arm64): DAISIE_4.6.0.tgz, r-release (x86_64): DAISIE_4.6.0.tgz, r-oldrel (x86_64): DAISIE_4.6.0.tgz |
Old sources: | DAISIE archive |
Reverse imports: | DAISIEprep |
Reverse suggests: | nLTT |
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