Last updated on 2024-10-31 10:50:34 CET.
| Package | ERROR | OK |
|---|---|---|
| corrplot | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.95
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘corrplot-intro.Rmd’ using rmarkdown
** Processing: webimg/intro-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 112505 bytes
Input file size = 112739 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94548
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94548
Output IDAT size = 94548 bytes (17957 bytes decrease)
Output file size = 94626 bytes (18113 bytes = 16.07% decrease)
** Processing: webimg/intro-2.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28579 bytes
Input file size = 28693 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27024
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27024
Output IDAT size = 27024 bytes (1555 bytes decrease)
Output file size = 27102 bytes (1591 bytes = 5.54% decrease)
** Processing: webimg/intro-3.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 111405 bytes
Input file size = 111639 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93260
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93260
Output IDAT size = 93260 bytes (18145 bytes decrease)
Output file size = 93338 bytes (18301 bytes = 16.39% decrease)
** Processing: webimg/intro-4.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 111565 bytes
Input file size = 111799 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93560
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93560
Output IDAT size = 93560 bytes (18005 bytes decrease)
Output file size = 93638 bytes (18161 bytes = 16.24% decrease)
** Processing: webimg/intro-5.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40759 bytes
Input file size = 40885 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 37397
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 37397
Output IDAT size = 37397 bytes (3362 bytes decrease)
Output file size = 37475 bytes (3410 bytes = 8.34% decrease)
** Processing: webimg/intro-6.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26595 bytes
Input file size = 26709 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25984
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24414
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24414
Output IDAT size = 24414 bytes (2181 bytes decrease)
Output file size = 24492 bytes (2217 bytes = 8.30% decrease)
** Processing: webimg/intro-7.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 77325 bytes
Input file size = 77511 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66110
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66110
Output IDAT size = 66110 bytes (11215 bytes decrease)
Output file size = 66188 bytes (11323 bytes = 14.61% decrease)
** Processing: webimg/intro-8.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 100720 bytes
Input file size = 100942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 84780
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 84780
Output IDAT size = 84780 bytes (15940 bytes decrease)
Output file size = 84858 bytes (16084 bytes = 15.93% decrease)
** Processing: webimg/intro-9.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 110959 bytes
Input file size = 111193 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103356
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103356
Output IDAT size = 103356 bytes (7603 bytes decrease)
Output file size = 103434 bytes (7759 bytes = 6.98% decrease)
** Processing: webimg/hclust-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 111661 bytes
Input file size = 111895 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93499
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93499
Output IDAT size = 93499 bytes (18162 bytes decrease)
Output file size = 93577 bytes (18318 bytes = 16.37% decrease)
** Processing: webimg/hclust-2.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30646 bytes
Input file size = 30760 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29916
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29054
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29054
Output IDAT size = 29054 bytes (1592 bytes decrease)
Output file size = 29132 bytes (1628 bytes = 5.29% decrease)
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: method$fun(x, control = control)
2: system.time(order <- method$fun(x, control = control))
3: seriate.dist(d_corr, method = method, ...)
4: seriate(d_corr, method = method, ...)
5: dist2order(Z, "ARSA")
6: eval(expr, envir)
7: eval(expr, envir)
8: withVisible(eval(expr, envir))
9: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = invokeRestart("eval_error", cnd))})
10: eval(call)
11: eval(call)
12: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
13: doWithOneRestart(return(expr), restart)
14: withOneRestart(expr, restarts[[1L]])
15: withRestartList(expr, restarts[-nr])
16: doWithOneRestart(return(expr), restart)
17: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
18: withRestartList(expr, restarts[-nr])
19: doWithOneRestart(return(expr), restart)
20: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
21: withRestartList(expr, restarts)
22: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE, eval_error = function(cnd) { signalCondition(cnd) stop(cnd) })
23: evaluate::evaluate(...)
24: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
25: in_dir(input_dir(), expr)
26: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
27: eng_r(options)
28: block_exec(params)
29: call_block(x)
30: process_group(group)
31: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
32: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
33: process_file(text, output)
34: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
35: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
36: vweave_rmarkdown(...)
37: engine$weave(file, quiet = quiet, encoding = enc)
38: doTryCatch(return(expr), name, parentenv, handler)
39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
40: tryCatchList(expr, classes, parentenv, handlers)
41: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
42: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/corrplot.Rcheck/vign_test/corrplot", skip = TRUE, ser_elibs = "/tmp/RtmpOgh7JB/file334d71241cc2a1.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-gcc