CRAN Package Check Results for Maintainer ‘Thore Egeland <Thore.Egeland at nmbu.no>’

Last updated on 2024-12-23 12:49:54 CET.

Package ERROR OK
Familias 1 12

Package Familias

Current CRAN status: ERROR: 1, OK: 12

Version: 2.6.1
Check: examples
Result: ERROR Running examples in ‘Familias-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Familias-package > ### Title: Familias: Inferring paternity and identification based on DNA > ### data > ### Aliases: Familias-package Familias > ### Keywords: package > > ### ** Examples > > persons <- c("mother", "daughter", "AF") > > # Pedigrees > ped1 <- FamiliasPedigree(id = persons, + dadid = c(NA, "AF", NA), + momid = c(NA, "mother", NA), + sex = c("female", "female", "male")) > > ped2 <- FamiliasPedigree(id = c(persons, "TF"), + dadid = c(NA, "TF", NA, NA), + momid = c(NA, "mother", NA, NA), + sex = c("female", "female", "male", "male")) > > ped3 <- FamiliasPedigree(id = c(persons, "TF", "gf", "gm"), + dadid = c(NA, "TF", "gf", "gf", NA, NA), + momid = c(NA, "mother", "gm", "gm", NA, NA), + sex = c("female", "female", "male", "male", "male", "female")) > op <- par(mfrow = c(1,3)) > plot(ped1); title("ped1: AF is father") > plot(ped2); title("ped2: AF is unrelated") Did not plot the following people: AF > plot(ped3); title("ped3: AF is uncle") > par(op) > > mypedigrees <- list(isFather = ped1, unrelated=ped2, isUncle = ped3) > > # Loci > locus1 <- FamiliasLocus(frequencies = c(0.1, 0.2, 0.3, 0.4), + allelenames = c("A", "B", "C", "D"), + name = "locus1") > locus2 <- FamiliasLocus(c(0.2, 0.3, 0.5), + c(17, 18, 19), + "loc2", + femaleMutationRate = 0.05) > myloci <- list(locus1, locus2) > > # Genotype data > datamatrix <- data.frame(locus1.1 = c("A", "A", "A"), + locus1.2 = c("B", "B", "C"), + locus2.1 = c(17, 19, 19), + locus2.2 = c(18, 18, 18), + row.names = persons) > > # Calculate LR > FamiliasPosterior(mypedigrees, myloci, datamatrix) *** buffer overflow detected ***: terminated Aborted Flavor: r-devel-linux-x86_64-debian-clang