Last updated on 2024-10-31 10:50:33 CET.
| Package | ERROR | OK |
|---|---|---|
| Familias | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 2.6.1
Check: examples
Result: ERROR
Running examples in ‘Familias-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Familias-package
> ### Title: Familias: Inferring paternity and identification based on DNA
> ### data
> ### Aliases: Familias-package Familias
> ### Keywords: package
>
> ### ** Examples
>
> persons <- c("mother", "daughter", "AF")
>
> # Pedigrees
> ped1 <- FamiliasPedigree(id = persons,
+ dadid = c(NA, "AF", NA),
+ momid = c(NA, "mother", NA),
+ sex = c("female", "female", "male"))
>
> ped2 <- FamiliasPedigree(id = c(persons, "TF"),
+ dadid = c(NA, "TF", NA, NA),
+ momid = c(NA, "mother", NA, NA),
+ sex = c("female", "female", "male", "male"))
>
> ped3 <- FamiliasPedigree(id = c(persons, "TF", "gf", "gm"),
+ dadid = c(NA, "TF", "gf", "gf", NA, NA),
+ momid = c(NA, "mother", "gm", "gm", NA, NA),
+ sex = c("female", "female", "male", "male", "male", "female"))
> op <- par(mfrow = c(1,3))
> plot(ped1); title("ped1: AF is father")
> plot(ped2); title("ped2: AF is unrelated")
Did not plot the following people: AF
> plot(ped3); title("ped3: AF is uncle")
> par(op)
>
> mypedigrees <- list(isFather = ped1, unrelated=ped2, isUncle = ped3)
>
> # Loci
> locus1 <- FamiliasLocus(frequencies = c(0.1, 0.2, 0.3, 0.4),
+ allelenames = c("A", "B", "C", "D"),
+ name = "locus1")
> locus2 <- FamiliasLocus(c(0.2, 0.3, 0.5),
+ c(17, 18, 19),
+ "loc2",
+ femaleMutationRate = 0.05)
> myloci <- list(locus1, locus2)
>
> # Genotype data
> datamatrix <- data.frame(locus1.1 = c("A", "A", "A"),
+ locus1.2 = c("B", "B", "C"),
+ locus2.1 = c(17, 19, 19),
+ locus2.2 = c(18, 18, 18),
+ row.names = persons)
>
> # Calculate LR
> FamiliasPosterior(mypedigrees, myloci, datamatrix)
*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-clang