Last updated on 2026-10-24 07:51:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 30.41 | 510.07 | 540.48 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 19.17 | 330.97 | 350.14 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 22.00 | 361.80 | 383.80 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 21.00 | 316.19 | 337.19 | OK | |
| r-devel-windows-x86_64 | 1.0.0 | 34.00 | 575.00 | 609.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 23.39 | 470.81 | 494.20 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 25.73 | 467.40 | 493.13 | OK | |
| r-release-macos-arm64 | 1.0.0 | 6.00 | 126.00 | 132.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 18.00 | 475.00 | 493.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 31.00 | 481.00 | 512.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 17.00 | 506.00 | 523.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 38.00 | 664.00 | 702.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [267s/300s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(svycoxme)
>
> test_check("svycoxme")
Saving _problems/test-residuals.coxme-19.R
Saving _problems/test-residuals.coxme-50.R
Saving _problems/test-residuals.coxme-80.R
Saving _problems/test-residuals.coxme-112.R
Saving _problems/test-residuals.coxme-203.R
1 - level Cluster Sampling design (with replacement)
With (100) clusters.
des <- survey::svydesign(ids = ~group_id, weights = ~weight, data = samp_srcs)
[ FAIL 5 | WARN 1 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-residuals.coxme.R:18:3'): residuals are the same: right-censored time ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(survival::Surv(stat_time, stat) ~ X1, design = des) at test-residuals.coxme.R:18:3
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
── Error ('test-residuals.coxme.R:49:3'): residuals are the same: right-censored time; ties ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(survival::Surv(stat_time, stat) ~ X1, design = des) at test-residuals.coxme.R:49:3
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
── Error ('test-residuals.coxme.R:79:3'): residuals are the same: counting-process time ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(...) at test-residuals.coxme.R:79:3
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
── Error ('test-residuals.coxme.R:111:3'): residuals are the same: counting process time; ties ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(survival::Surv(stat_time, stat) ~ X1, design = des) at test-residuals.coxme.R:111:3
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
── Error ('test-residuals.coxme.R:202:3'): residuals are the same: right-censored time; missing data ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(survival::Surv(stat_time, stat) ~ X1, design = des) at test-residuals.coxme.R:202:3
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
[ FAIL 5 | WARN 1 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc