Last updated on 2026-10-24 13:52:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.4.87 | 210.82 | 505.26 | 716.08 | OK | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 4.4.87 | 206.19 | 302.05 | 508.24 | OK | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 4.5.11 | 380.00 | 358.10 | 738.10 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 4.5.11 | 600.00 | 346.10 | 946.10 | OK | |
| r-devel-windows-x86_64 | 4.4.87 | 220.00 | 371.00 | 591.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 4.4.87 | 256.39 | 376.48 | 632.87 | OK | --no-vignettes |
| r-release-linux-x86_64 | 4.4.87 | 253.35 | 382.79 | 636.14 | OK | --no-vignettes |
| r-release-macos-arm64 | 4.5.11 | 121.00 | 75.00 | 196.00 | OK | |
| r-release-macos-x86_64 | 4.5.11 | 395.00 | 1019.00 | 1414.00 | WARN | |
| r-release-windows-x86_64 | 4.4.87 | 221.00 | 326.00 | 547.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 4.5.11 | 137.00 | 63.00 | 200.00 | ERROR | |
| r-oldrel-macos-x86_64 | 4.5.11 | 388.00 | 755.00 | 1143.00 | WARN | |
| r-oldrel-windows-x86_64 | 4.4.87 | 291.00 | 401.00 | 692.00 | OK | --no-vignettes |
clang-UBSAN gcc-UBSAN M1-SAN MKL OpenBLAS
Version: 4.5.11
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
native_relationships.cpp:171:7: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.6/sommer.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.1.sdk’
Flavor: r-release-macos-x86_64
Version: 4.5.11
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
native_relationships.cpp:171:7: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/sommer.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.1.sdk’
Flavor: r-oldrel-macos-arm64
Version: 4.5.11
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/67s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sommer)
Loading required package: Matrix
Loading required package: enhancer
Loading required package: MASS
Loading required package: crayon
sommer: No accessible NVIDIA GPU detected; only CPU options are available.
>
> test_check("sommer")
Saving _problems/test-ai-variance-floor-80.R
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
warning: solve(): system is close to singular; rcond: 1.45378e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.449e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.22882e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.01681e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.5079e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.90311e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.07025e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.01255e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 9.5593e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.48044e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.20429e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.26906e-19; attempting approx solution
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
warning: solve(): system is close to singular; rcond: 1.45378e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.449e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.22882e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.01681e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.5079e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.90311e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.07025e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.01255e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 9.5593e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.48044e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.20429e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.26906e-19; attempting approx solution
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
warning: solve(): system is close to singular; rcond: 8.58305e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.21412e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 8.35883e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.01351e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.60894e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.54895e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.74055e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.04986e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.87442e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.46713e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 8.12777e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 8.65442e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.30849e-16; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.68982e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 8.53413e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.68941e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 4.61747e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.04098e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 4.77296e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.16384e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.31087e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.45248e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.78759e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.59412e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.98219e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.48957e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 4.75384e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.57188e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.1863e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.56942e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.98829e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.87491e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 4.38668e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 8.60944e-20; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.46085e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.81559e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 4.17917e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 8.08062e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.02041e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.37747e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.98835e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.64637e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.89168e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.98567e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.65833e-20; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.5551e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.0971e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.31435e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.98013e-20; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.31435e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.31087e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 5.31074e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.79356e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.13804e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.30499e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.65537e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.14423e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.04019e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 4.18027e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.66017e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.04019e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.08039e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.05352e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.20225e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.05352e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.20225e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.05352e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.20225e-18; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.42844e-20; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.58605e-21; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.53845e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.27279e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.14405e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.59778e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.42844e-20; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.58605e-21; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.53845e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.27279e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.14405e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.59778e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.42844e-20; attempting approx solution
warning: solve(): system is close to singular; rcond: 6.58605e-21; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.53845e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.27279e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.14405e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.59778e-19; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.46259e-22; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.01261e-22; attempting approx solution
warning: solve(): system is close to singular; rcond: 2.46259e-22; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.01261e-22; attempting approx solution
warning: solve(): system is close to singular; rcond: 1.59974e-18; attempting approx solution
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
MME solve-only path: iteration-on-data PCG (block-Jacobi)
PCG converged in 7 iterations (relative residual 8.32737e-16; 126 equations, 1 residual block patterns).
Fit CPU usage: 0.005 CPU-s / 0.006 elapsed-s = 0.83 average CPUs (not an active-thread count).
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
MME solve-only path: iteration-on-data PCG (block-Jacobi)
PCG converged in 7 iterations (relative residual 2.36089e-15; 126 equations, 1 residual block patterns).
Fit CPU usage: 0.005 CPU-s / 0.005 elapsed-s = 1.00 average CPUs (not an active-thread count).
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
MME solve-only path: iteration-on-data PCG (block-Jacobi)
PCG converged in 7 iterations (relative residual 8.32737e-16; 126 equations, 1 residual block patterns).
Fit CPU usage: 0.005 CPU-s / 0.005 elapsed-s = 1.00 average CPUs (not an active-thread count).
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
MME solve-only path: iteration-on-data PCG (block-Jacobi)
PCG converged in 7 iterations (relative residual 2.58555e-15; 44 equations, 1 residual block patterns).
Fit CPU usage: 0.005 CPU-s / 0.004 elapsed-s = 1.25 average CPUs (not an active-thread count).
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
MME solve-only path: iteration-on-data PCG (block-Jacobi)
PCG converged in 7 iterations (relative residual 3.28948e-16; 44 equations, 1 residual block patterns).
Fit CPU usage: 0.005 CPU-s / 0.004 elapsed-s = 1.25 average CPUs (not an active-thread count).
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
MME solve-only path: iteration-on-data PCG (block-Jacobi)
PCG converged in 7 iterations (relative residual 1.97794e-15; 126 equations, 1 residual block patterns).
Fit CPU usage: 0.005 CPU-s / 0.005 elapsed-s = 1.00 average CPUs (not an active-thread count).
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Engine selected: direct inversion (formulation='direct')
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
NOTE: Results may be misleading due to involvement in interactions
NOTE: Results may be misleading due to involvement in interactions
NOTE: Results may be misleading due to involvement in interactions
Adding 2 additional Gu levels to the main-effect model matrix: i11, i12
Adding 1 additional Gu levels to the main-effect model matrix: new-genotype
Adding 25 additional Gu levels to the main-effect model matrix: i26, i27, i28, i29, i30, i31, i32, i33, i34, i35 ...
Adding 25 additional Gu levels to the main-effect model matrix: i26, i27, i28, i29, i30, i31, i32, i33, i34, i35 ...
Adding 1 additional Gu levels to the main-effect model matrix: g8
Adding 1 additional Gu levels to the main-effect model matrix: id30
Adding 1 additional Gu levels to the main-effect model matrix: id30
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
Using the weights matrix
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
BLAS backend: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib.
BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 16.
Using the weights matrix
Using the weights matrix
warning: solve(): system is close to singular; rcond: 4.30847e-17; attempting approx solution
Using the weights matrix
warning: solve(): system is close to singular; rcond: 4.41793e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 3.46128e-17; attempting approx solution
warning: solve(): system is close to singular; rcond: 7.86529e-17; attempting approx solution
[ FAIL 1 | WARN 0 | SKIP 17 | PASS 8415 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• Native checks require the package source tree (11):
'test-ai-recovery.R:15:3', 'test-ai-variance-floor.R:2:3',
'test-ai-variance-floor.R:34:3', 'test-ai-variance-floor.R:48:3',
'test-mme-control-native.R:2:3', 'test-mme-control-native.R:8:3',
'test-mme-paths.R:2:3', 'test-mme-saddle.R:20:3', 'test-mme-solver.R:2:3',
'test-pcg-numerics.R:4:5', 'test-reduced-ai.R:39:3'
• No supported BLAS controller available (1): 'test-mmes-threads.R:41:3'
• On CRAN (3): 'test-wald-mmes.R:42:3', 'test-wald-mmes.R:54:3',
'test-wald-mmes.R:76:3'
• README requires the package source tree (1): 'test-readme.R:3:3'
• Set SOMMER_TEST_CUDA=true on a CUDA build with an NVIDIA GPU (1):
'test-mme-gpu.R:57:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ai-variance-floor.R:80:7'): diagonal variance floors converge consistently on direct and MME paths ──
Expected `unlist(fit$covParWorking)` to equal `unlist(fits[[1]]$covParWorking)`.
Differences:
`actual`: 0.75085324 -13.81551056 -0.39921779
`expected`: 0.75085337 -13.81551056 -0.39921778
[ FAIL 1 | WARN 0 | SKIP 17 | PASS 8415 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 4.5.11
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
native_relationships.cpp:171:7: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat<double>') to itself [-Wself-assign-overloaded]
See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/sommer.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.1.sdk’
Flavor: r-oldrel-macos-x86_64