CRAN Package Check Results for Package smdi

Last updated on 2024-07-27 03:49:42 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 20.56 635.33 655.89 OK
r-devel-linux-x86_64-debian-gcc 0.2.2 12.88 396.52 409.40 ERROR
r-devel-linux-x86_64-fedora-clang 0.3.0 820.90 OK
r-devel-linux-x86_64-fedora-gcc 0.3.0 793.14 OK
r-devel-windows-x86_64 0.3.0 23.00 412.00 435.00 OK
r-patched-linux-x86_64 0.2.2 ERROR
r-release-linux-x86_64 0.2.2 11.36 542.73 554.09 NOTE
r-release-macos-arm64 0.3.0 207.00 OK
r-release-macos-x86_64 0.3.0 384.00 OK
r-release-windows-x86_64 0.3.0 19.00 450.00 469.00 OK
r-oldrel-macos-arm64 0.3.0 497.00 ERROR
r-oldrel-macos-x86_64 0.3.0 744.00 ERROR
r-oldrel-windows-x86_64 0.3.0 23.00 436.00 459.00 OK

Check Details

Version: 0.2.2
Check: Rd files
Result: NOTE checkRd: (-1) smdi_diagnose.Rd:49: Lost braces; missing escapes or markup? 49 | \item asmd_{mean/median}: average/median absolute standardized mean difference (and min, max) of patient characteristics between those without (1) and with (0) observed covariate | ^ Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: smdi_asmd.Rd: CreateTableOne smdi_hotelling.Rd: hotelling.test smdi_little.Rd: mcar_test smdi_rf.Rd: randomForest smdi_style_gt.Rd: gt Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘a_data_generation.Rmd’ using rmarkdown Quitting from lines 105-115 [pr(exposure)_tbl] (a_data_generation.Rmd) Error: processing vignette 'a_data_generation.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘a_data_generation.Rmd’ --- re-building ‘b_routine_diagnostics.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-5-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22104 bytes Input file size = 22206 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20281 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651 Output IDAT size = 19651 bytes (2453 bytes decrease) Output file size = 19729 bytes (2477 bytes = 11.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-6-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39424 bytes Input file size = 39550 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520 Output IDAT size = 34520 bytes (4904 bytes decrease) Output file size = 34598 bytes (4952 bytes = 12.52% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-7-1.png 900x675 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10795 bytes Input file size = 11665 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693 Output IDAT size = 8693 bytes (2102 bytes decrease) Output file size = 8771 bytes (2894 bytes = 24.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-11-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54591 bytes Input file size = 54741 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682 Output IDAT size = 44682 bytes (9909 bytes decrease) Output file size = 44760 bytes (9981 bytes = 18.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-17-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51345 bytes Input file size = 51495 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754 Output IDAT size = 41754 bytes (9591 bytes decrease) Output file size = 41832 bytes (9663 bytes = 18.76% decrease) --- finished re-building ‘b_routine_diagnostics.Rmd’ --- re-building ‘c_multivariate_missingness.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/c_multivariate_missingness_files/figure-html/unnamed-chunk-4-1.png 900x675 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8063 bytes Input file size = 8918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444 Output IDAT size = 6444 bytes (1619 bytes decrease) Output file size = 6522 bytes (2396 bytes = 26.87% decrease) --- finished re-building ‘c_multivariate_missingness.Rmd’ --- re-building ‘d_narfcs_sensitivity_analysis.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-3-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49906 bytes Input file size = 50056 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39816 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39816 Output IDAT size = 39816 bytes (10090 bytes decrease) Output file size = 39894 bytes (10162 bytes = 20.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-6-1.png 900x675 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 22563 bytes Input file size = 23445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419 Output IDAT size = 20419 bytes (2144 bytes decrease) Output file size = 20497 bytes (2948 bytes = 12.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-8-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53311 bytes Input file size = 53461 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158 Output IDAT size = 41158 bytes (12153 bytes decrease) Output file size = 41236 bytes (12225 bytes = 22.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-10-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52477 bytes Input file size = 52627 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892 Output IDAT size = 39892 bytes (12585 bytes decrease) Output file size = 39970 bytes (12657 bytes = 24.05% decrease) --- finished re-building ‘d_narfcs_sensitivity_analysis.Rmd’ --- re-building ‘smdi.Rmd’ using rmarkdown --- finished re-building ‘smdi.Rmd’ SUMMARY: processing the following file failed: ‘a_data_generation.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘a_data_generation.Rmd’ using rmarkdown Quitting from lines 105-115 [pr(exposure)_tbl] (a_data_generation.Rmd) Error: processing vignette 'a_data_generation.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘a_data_generation.Rmd’ --- re-building ‘b_routine_diagnostics.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-5-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22104 bytes Input file size = 22206 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20281 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651 Output IDAT size = 19651 bytes (2453 bytes decrease) Output file size = 19729 bytes (2477 bytes = 11.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-6-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39424 bytes Input file size = 39550 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520 Output IDAT size = 34520 bytes (4904 bytes decrease) Output file size = 34598 bytes (4952 bytes = 12.52% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-7-1.png 900x675 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10795 bytes Input file size = 11665 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693 Output IDAT size = 8693 bytes (2102 bytes decrease) Output file size = 8771 bytes (2894 bytes = 24.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-11-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54591 bytes Input file size = 54741 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682 Output IDAT size = 44682 bytes (9909 bytes decrease) Output file size = 44760 bytes (9981 bytes = 18.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-17-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51345 bytes Input file size = 51495 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754 Output IDAT size = 41754 bytes (9591 bytes decrease) Output file size = 41832 bytes (9663 bytes = 18.76% decrease) --- finished re-building ‘b_routine_diagnostics.Rmd’ --- re-building ‘c_multivariate_missingness.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/c_multivariate_missingness_files/figure-html/unnamed-chunk-4-1.png 900x675 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8063 bytes Input file size = 8918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444 Output IDAT size = 6444 bytes (1619 bytes decrease) Output file size = 6522 bytes (2396 bytes = 26.87% decrease) --- finished re-building ‘c_multivariate_missingness.Rmd’ --- re-building ‘d_narfcs_sensitivity_analysis.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-3-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49906 bytes Input file size = 50056 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39816 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39816 Output IDAT size = 39816 bytes (10090 bytes decrease) Output file size = 39894 bytes (10162 bytes = 20.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-6-1.png 900x675 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 22563 bytes Input file size = 23445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419 Output IDAT size = 20419 bytes (2144 bytes decrease) Output file size = 20497 bytes (2948 bytes = 12.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-8-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53311 bytes Input file size = 53461 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158 Output IDAT size = 41158 bytes (12153 bytes decrease) Output file size = 41236 bytes (12225 bytes = 22.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-10-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52477 bytes Input file size = 52627 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892 Output IDAT size = 39892 bytes (12585 bytes decrease) Output file size = 39970 bytes (12657 bytes = 24.05% decrease) --- finished re-building ‘d_narfcs_sensitivity_analysis.Rmd’ --- re-building ‘smdi.Rmd’ using rmarkdown --- finished re-building ‘smdi.Rmd’ SUMMARY: processing the following file failed: ‘a_data_generation.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.3.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘a_data_generation.Rmd’ ... > use_data(smdi_data_complete, overwrite = TRUE) Warning in path_file(base_path) : restarting interrupted promise evaluation When sourcing ‘a_data_generation.R’: Error: Failed to evaluate glue component {ui_value(project_name())} Caused by error: ! Path '/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmprhTiVl/file1734445aacd48/vignettes/' does not appear to be inside a project or package. Read more in the help for `proj_get()`. Execution halted when running code in ‘b_routine_diagnostics.Rmd’ ... > library(here) here() starts at /private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpiPybpO/file174f56c6ba51c/vignettes > library(knitr) > include_graphics(here("vignettes", "smdi_diagnose_table.png")) When sourcing ‘b_routine_diagnostics.R’: Error: Cannot find the file(s): "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpiPybpO/file174f56c6ba51c/vignettes/vignettes/smdi_diagnose_table.png" Execution halted ‘a_data_generation.Rmd’ using ‘UTF-8’... failed ‘b_routine_diagnostics.Rmd’ using ‘UTF-8’... failed ‘c_multivariate_missingness.Rmd’ using ‘UTF-8’... [22s/27s] OK ‘d_narfcs_sensitivity_analysis.Rmd’ using ‘UTF-8’... [85s/95s] OK ‘smdi.Rmd’ using ‘UTF-8’... [19s/19s] OK Flavor: r-oldrel-macos-arm64

Version: 0.3.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘a_data_generation.Rmd’ ... > use_data(smdi_data_complete, overwrite = TRUE) Warning in path_file(base_path) : restarting interrupted promise evaluation When sourcing ‘a_data_generation.R’: Error: Failed to evaluate glue component {ui_value(project_name())} Caused by error: ! Path '/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpdQ11nl/file46a2badfa2/vignettes/' does not appear to be inside a project or package. Read more in the help for `proj_get()`. Execution halted when running code in ‘b_routine_diagnostics.Rmd’ ... > library(here) here() starts at /private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpZ0UMVf/file584a2f22f5cd/vignettes > library(knitr) > include_graphics(here("vignettes", "smdi_diagnose_table.png")) When sourcing ‘b_routine_diagnostics.R’: Error: Cannot find the file(s): "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpZ0UMVf/file584a2f22f5cd/vignettes/vignettes/smdi_diagnose_table.png" Execution halted ‘a_data_generation.Rmd’ using ‘UTF-8’... failed ‘b_routine_diagnostics.Rmd’ using ‘UTF-8’... failed ‘c_multivariate_missingness.Rmd’ using ‘UTF-8’... [24s/45s] OK ‘d_narfcs_sensitivity_analysis.Rmd’ using ‘UTF-8’... [116s/142s] OK ‘smdi.Rmd’ using ‘UTF-8’... [19s/21s] OK Flavor: r-oldrel-macos-x86_64