CRAN Package Check Results for Package smdi

Last updated on 2024-07-24 12:21:06 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 16.88 564.66 581.54 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.2 12.60 420.89 433.49 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.2 689.85 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.2 735.37 NOTE
r-devel-windows-x86_64 0.2.2 14.00 456.00 470.00 NOTE
r-patched-linux-x86_64 0.2.2 23.64 537.92 561.56 NOTE
r-release-linux-x86_64 0.2.2 11.36 542.73 554.09 NOTE
r-release-macos-arm64 0.2.2 264.00 NOTE
r-release-macos-x86_64 0.2.2 350.00 NOTE
r-release-windows-x86_64 0.2.2 15.00 458.00 473.00 NOTE
r-oldrel-macos-arm64 0.2.2 186.00 OK
r-oldrel-macos-x86_64 0.2.2 266.00 OK
r-oldrel-windows-x86_64 0.2.2 22.00 542.00 564.00 OK

Check Details

Version: 0.2.2
Check: Rd files
Result: NOTE checkRd: (-1) smdi_diagnose.Rd:49: Lost braces; missing escapes or markup? 49 | \item asmd_{mean/median}: average/median absolute standardized mean difference (and min, max) of patient characteristics between those without (1) and with (0) observed covariate | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: smdi_asmd.Rd: CreateTableOne smdi_hotelling.Rd: hotelling.test smdi_little.Rd: mcar_test smdi_rf.Rd: randomForest smdi_style_gt.Rd: gt Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a_data_generation.Rmd’ using rmarkdown Quitting from lines 105-115 [pr(exposure)_tbl] (a_data_generation.Rmd) Error: processing vignette 'a_data_generation.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘a_data_generation.Rmd’ --- re-building ‘b_routine_diagnostics.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-5-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22104 bytes Input file size = 22206 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20281 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651 Output IDAT size = 19651 bytes (2453 bytes decrease) Output file size = 19729 bytes (2477 bytes = 11.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-6-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39424 bytes Input file size = 39550 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520 Output IDAT size = 34520 bytes (4904 bytes decrease) Output file size = 34598 bytes (4952 bytes = 12.52% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-7-1.png 900x675 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10795 bytes Input file size = 11665 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693 Output IDAT size = 8693 bytes (2102 bytes decrease) Output file size = 8771 bytes (2894 bytes = 24.81% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-11-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54591 bytes Input file size = 54741 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682 Output IDAT size = 44682 bytes (9909 bytes decrease) Output file size = 44760 bytes (9981 bytes = 18.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-17-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51345 bytes Input file size = 51495 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754 Output IDAT size = 41754 bytes (9591 bytes decrease) Output file size = 41832 bytes (9663 bytes = 18.76% decrease) --- finished re-building ‘b_routine_diagnostics.Rmd’ --- re-building ‘c_multivariate_missingness.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/c_multivariate_missingness_files/figure-html/unnamed-chunk-4-1.png 900x675 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8063 bytes Input file size = 8918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444 Output IDAT size = 6444 bytes (1619 bytes decrease) Output file size = 6522 bytes (2396 bytes = 26.87% decrease) --- finished re-building ‘c_multivariate_missingness.Rmd’ --- re-building ‘d_narfcs_sensitivity_analysis.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-3-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49910 bytes Input file size = 50060 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39820 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39820 Output IDAT size = 39820 bytes (10090 bytes decrease) Output file size = 39898 bytes (10162 bytes = 20.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-6-1.png 900x675 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 22563 bytes Input file size = 23445 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419 Output IDAT size = 20419 bytes (2144 bytes decrease) Output file size = 20497 bytes (2948 bytes = 12.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-8-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53311 bytes Input file size = 53461 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158 Output IDAT size = 41158 bytes (12153 bytes decrease) Output file size = 41236 bytes (12225 bytes = 22.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-10-1.png 900x675 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52477 bytes Input file size = 52627 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892 Output IDAT size = 39892 bytes (12585 bytes decrease) Output file size = 39970 bytes (12657 bytes = 24.05% decrease) --- finished re-building ‘d_narfcs_sensitivity_analysis.Rmd’ --- re-building ‘smdi.Rmd’ using rmarkdown --- finished re-building ‘smdi.Rmd’ SUMMARY: processing the following file failed: ‘a_data_generation.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang