Last updated on 2024-07-24 12:21:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 16.88 | 564.66 | 581.54 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 12.60 | 420.89 | 433.49 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 689.85 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 735.37 | NOTE | |||
| r-devel-windows-x86_64 | 0.2.2 | 14.00 | 456.00 | 470.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.2 | 23.64 | 537.92 | 561.56 | NOTE | |
| r-release-linux-x86_64 | 0.2.2 | 11.36 | 542.73 | 554.09 | NOTE | |
| r-release-macos-arm64 | 0.2.2 | 264.00 | NOTE | |||
| r-release-macos-x86_64 | 0.2.2 | 350.00 | NOTE | |||
| r-release-windows-x86_64 | 0.2.2 | 15.00 | 458.00 | 473.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.2.2 | 186.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.2 | 266.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.2 | 22.00 | 542.00 | 564.00 | OK |
Version: 0.2.2
Check: Rd files
Result: NOTE
checkRd: (-1) smdi_diagnose.Rd:49: Lost braces; missing escapes or markup?
49 | \item asmd_{mean/median}: average/median absolute standardized mean difference (and min, max) of patient characteristics between those without (1) and with (0) observed covariate
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.2.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
smdi_asmd.Rd: CreateTableOne
smdi_hotelling.Rd: hotelling.test
smdi_little.Rd: mcar_test
smdi_rf.Rd: randomForest
smdi_style_gt.Rd: gt
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a_data_generation.Rmd’ using rmarkdown
Quitting from lines 105-115 [pr(exposure)_tbl] (a_data_generation.Rmd)
Error: processing vignette 'a_data_generation.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘a_data_generation.Rmd’
--- re-building ‘b_routine_diagnostics.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-5-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22104 bytes
Input file size = 22206 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20281
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19651
Output IDAT size = 19651 bytes (2453 bytes decrease)
Output file size = 19729 bytes (2477 bytes = 11.15% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-6-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39424 bytes
Input file size = 39550 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34520
Output IDAT size = 34520 bytes (4904 bytes decrease)
Output file size = 34598 bytes (4952 bytes = 12.52% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-7-1.png
900x675 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10795 bytes
Input file size = 11665 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8693
Output IDAT size = 8693 bytes (2102 bytes decrease)
Output file size = 8771 bytes (2894 bytes = 24.81% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-11-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54591 bytes
Input file size = 54741 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44682
Output IDAT size = 44682 bytes (9909 bytes decrease)
Output file size = 44760 bytes (9981 bytes = 18.23% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-17-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51345 bytes
Input file size = 51495 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41754
Output IDAT size = 41754 bytes (9591 bytes decrease)
Output file size = 41832 bytes (9663 bytes = 18.76% decrease)
--- finished re-building ‘b_routine_diagnostics.Rmd’
--- re-building ‘c_multivariate_missingness.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/c_multivariate_missingness_files/figure-html/unnamed-chunk-4-1.png
900x675 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8063 bytes
Input file size = 8918 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6444
Output IDAT size = 6444 bytes (1619 bytes decrease)
Output file size = 6522 bytes (2396 bytes = 26.87% decrease)
--- finished re-building ‘c_multivariate_missingness.Rmd’
--- re-building ‘d_narfcs_sensitivity_analysis.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-3-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 49910 bytes
Input file size = 50060 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39820
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39820
Output IDAT size = 39820 bytes (10090 bytes decrease)
Output file size = 39898 bytes (10162 bytes = 20.30% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-6-1.png
900x675 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 22563 bytes
Input file size = 23445 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20419
Output IDAT size = 20419 bytes (2144 bytes decrease)
Output file size = 20497 bytes (2948 bytes = 12.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-8-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53311 bytes
Input file size = 53461 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41158
Output IDAT size = 41158 bytes (12153 bytes decrease)
Output file size = 41236 bytes (12225 bytes = 22.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-10-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52477 bytes
Input file size = 52627 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39892
Output IDAT size = 39892 bytes (12585 bytes decrease)
Output file size = 39970 bytes (12657 bytes = 24.05% decrease)
--- finished re-building ‘d_narfcs_sensitivity_analysis.Rmd’
--- re-building ‘smdi.Rmd’ using rmarkdown
--- finished re-building ‘smdi.Rmd’
SUMMARY: processing the following file failed:
‘a_data_generation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang