Last updated on 2026-10-23 22:53:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.13.1 | 7.60 | 207.23 | 214.83 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.13.1 | 6.28 | 137.04 | 143.32 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.13.1 | 162.82 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.13.1 | 146.38 | OK | |||
| r-devel-windows-x86_64 | 0.13.1 | 16.00 | 227.00 | 243.00 | OK | |
| r-patched-linux-x86_64 | 0.13.1 | 8.91 | 192.86 | 201.77 | OK | |
| r-release-linux-x86_64 | 0.13.1 | 7.52 | 191.93 | 199.45 | OK | |
| r-release-macos-arm64 | 0.13.1 | 2.00 | 51.00 | 53.00 | OK | |
| r-release-macos-x86_64 | 0.13.1 | 7.00 | 256.00 | 263.00 | OK | |
| r-release-windows-x86_64 | 0.13.1 | 14.00 | 209.00 | 223.00 | OK | |
| r-oldrel-macos-arm64 | 0.13.1 | 2.00 | 51.00 | 53.00 | OK | |
| r-oldrel-macos-x86_64 | 0.13.1 | 7.00 | 257.00 | 264.00 | OK | |
| r-oldrel-windows-x86_64 | 0.13.1 | 20.00 | 276.00 | 296.00 | OK |
Version: 0.13.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘A-introduction.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘A-introduction.Rmd’
--- re-building ‘B-relhaz.Rmd’ using rmarkdown
Quitting from B-relhaz.Rmd:189-289 [run-models]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─base::do.call(...)
2. └─base::lapply(...)
3. └─global FUN(X[[i]], ...)
4. └─rstpm2::stpm2(Surv(t, d) ~ x, data = data, df = 2)
5. └─base::eval(m, data, parent.frame())
6. └─base::eval(m, data, parent.frame())
7. └─rstpm2::gsm(formula = Surv(t, d) ~ x, data = data, df = 2, penalised = FALSE)
8. ├─link$link(...)
9. │ └─base::as.vector(S)
10. ├─base::pmin(...)
11. ├─base::pmax(...)
12. └─rstpm2:::Shat(coxph.obj, data, control$old.init)
13. ├─base::suppressWarnings(survfit(obj, se.fit = FALSE))
14. │ └─base::withCallingHandlers(...)
15. ├─survival::survfit(obj, se.fit = FALSE)
16. └─survival:::survfit.coxph(obj, se.fit = FALSE)
17. └─survival:::model.matrix.coxph(object, data = mf)
18. └─stats::delete.response(object$terms)
19. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'B-relhaz.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘B-relhaz.Rmd’
--- re-building ‘C-plotting.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘C-plotting.Rmd’
--- re-building ‘D-nlp.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘D-nlp.Rmd’
--- re-building ‘E-custom-inputs.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘E-custom-inputs.Rmd’
--- re-building ‘F-rsimsumtidyverse.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘F-rsimsumtidyverse.Rmd’
SUMMARY: processing the following file failed:
‘B-relhaz.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc