Last updated on 2026-11-14 22:49:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.1 | 2.15 | 95.79 | 97.94 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.1 | 1.88 | 89.54 | 91.42 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.1 | 69.73 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.1 | 87.00 | ERROR | |||
| r-devel-windows-x86_64 | 0.4.1 | 7.00 | 257.00 | 264.00 | OK | |
| r-patched-linux-x86_64 | 0.4.1 | 2.85 | 116.76 | 119.61 | OK | |
| r-release-linux-x86_64 | 0.4.1 | 2.30 | 116.57 | 118.87 | OK | |
| r-release-macos-arm64 | 0.4.1 | 1.00 | 152.00 | 153.00 | OK | |
| r-release-macos-x86_64 | 0.4.1 | 2.00 | 505.00 | 507.00 | OK | |
| r-release-windows-x86_64 | 0.4.1 | 6.00 | 223.00 | 229.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.4.1 | 2.00 | 459.00 | 461.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.1 | 7.00 | 324.00 | 331.00 | OK |
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘BadCoordinateID.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘BadCoordinateID.Rmd’
--- re-building ‘BasicUsage.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘BasicUsage.Rmd’
--- re-building ‘Fields.Rmd’ using rmarkdown
Quitting from Fields.Rmd:179-188 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
▆
1. └─ridigbio::idig_search_media(...)
2. └─ridigbio::idig_search(...)
3. └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
4. └─ridigbio:::idig_check(req)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Fields.Rmd' failed with diagnostics:
HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘Fields.Rmd’
--- re-building ‘FindTissue.Rmd’ using rmarkdown
Quitting from FindTissue.Rmd:58-75 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
▆
1. └─ridigbio::idig_search_records(...)
2. └─ridigbio::idig_search(...)
3. └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
4. └─ridigbio:::idig_check(req)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'FindTissue.Rmd' failed with diagnostics:
HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘FindTissue.Rmd’
--- re-building ‘IDDataFlags.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘IDDataFlags.Rmd’
--- re-building ‘MediaAPIDemo.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘MediaAPIDemo.Rmd’
--- re-building ‘ModifiedDataID.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ModifiedDataID.Rmd’
--- re-building ‘RecordAPIDemo.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
[WARNING] Div at RecordAPIDemo.knit.md line 200 column 1 unclosed at RecordAPIDemo.knit.md line 12580 column 1, closing implicitly.
--- finished re-building ‘RecordAPIDemo.Rmd’
--- re-building ‘ridigbio.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ridigbio.Rmd’
SUMMARY: processing the following files failed:
‘Fields.Rmd’ ‘FindTissue.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘BadCoordinateID.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘BadCoordinateID.Rmd’
--- re-building ‘BasicUsage.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘BasicUsage.Rmd’
--- re-building ‘Fields.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘Fields.Rmd’
--- re-building ‘FindTissue.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘FindTissue.Rmd’
--- re-building ‘IDDataFlags.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘IDDataFlags.Rmd’
--- re-building ‘MediaAPIDemo.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘MediaAPIDemo.Rmd’
--- re-building ‘ModifiedDataID.Rmd’ using rmarkdown
Quitting from ModifiedDataID.Rmd:70-109 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
▆
1. ├─... %>% ...
2. ├─dplyr::select(...)
3. ├─dplyr::rename(...)
4. └─ridigbio::idig_search_records(...)
5. └─ridigbio::idig_search(...)
6. └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
7. └─ridigbio:::idig_check(req)
8. └─base::tryCatch(...)
9. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ModifiedDataID.Rmd' failed with diagnostics:
HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘ModifiedDataID.Rmd’
--- re-building ‘RecordAPIDemo.Rmd’ using rmarkdown
Quitting from RecordAPIDemo.Rmd:145-164 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
▆
1. └─ridigbio::idig_search_records(...)
2. └─ridigbio::idig_search(...)
3. └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
4. └─ridigbio:::idig_check(req)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RecordAPIDemo.Rmd' failed with diagnostics:
HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘RecordAPIDemo.Rmd’
--- re-building ‘ridigbio.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ridigbio.Rmd’
SUMMARY: processing the following files failed:
‘ModifiedDataID.Rmd’ ‘RecordAPIDemo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘BadCoordinateID.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘BadCoordinateID.Rmd’
--- re-building ‘BasicUsage.Rmd’ using rmarkdown
Quitting from BasicUsage.Rmd:59-61 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
▆
1. └─ridigbio::idig_search_records(rq = list(scientificname = "Galax urceolata"))
2. └─ridigbio::idig_search(...)
3. └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
4. └─ridigbio:::idig_check(req)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BasicUsage.Rmd' failed with diagnostics:
HTTP failure: 500
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘BasicUsage.Rmd’
--- re-building ‘Fields.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘Fields.Rmd’
--- re-building ‘FindTissue.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘FindTissue.Rmd’
--- re-building ‘IDDataFlags.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘IDDataFlags.Rmd’
--- re-building ‘MediaAPIDemo.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘MediaAPIDemo.Rmd’
--- re-building ‘ModifiedDataID.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ModifiedDataID.Rmd’
--- re-building ‘RecordAPIDemo.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
[WARNING] Div at RecordAPIDemo.knit.md line 200 column 1 unclosed at RecordAPIDemo.knit.md line 12580 column 1, closing implicitly.
--- finished re-building ‘RecordAPIDemo.Rmd’
--- re-building ‘ridigbio.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ridigbio.Rmd’
SUMMARY: processing the following file failed:
‘BasicUsage.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc