Last updated on 2025-03-06 21:50:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.7.8 | 14.43 | 90.66 | 105.09 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.7.8 | 8.58 | 60.69 | 69.27 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.7.8 | 181.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.7.9 | 214.51 | OK | |||
| r-devel-macos-arm64 | 1.2.7.9 | 123.00 | OK | |||
| r-devel-macos-x86_64 | 1.2.7.9 | 211.00 | OK | |||
| r-devel-windows-x86_64 | 1.2.7.8 | 17.00 | 118.00 | 135.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.7.8 | OK | ||||
| r-release-linux-x86_64 | 1.2.7.8 | 11.39 | 106.81 | 118.20 | OK | |
| r-release-macos-arm64 | 1.2.7.9 | 101.00 | OK | |||
| r-release-macos-x86_64 | 1.2.7.9 | 234.00 | OK | |||
| r-release-windows-x86_64 | 1.2.7.8 | 16.00 | 179.00 | 195.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.7.9 | 95.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.7.9 | 208.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.7.8 | 21.00 | 228.00 | 249.00 | OK |
Version: 1.2.7.8
Check: examples
Result: ERROR
Running examples in ‘qMRI-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estimateIRfluid
> ### Title: Estimate parameters in Inversion Recovery MRI experiments model
> ### for CSF voxel
> ### Aliases: estimateIRfluid
> ### Keywords: models regression
>
> ### ** Examples
>
> dataDir0 <- system.file("extdataIR", package = "qMRI")
> dataDir <- tempdir("IRdata")
Error in tempdir(check) : NA in coercion to boolean
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
calculateQI 5.45 0.11 6.878
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘IRMRI-Example.Rnw’ using Sweave
Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics:
chunk 2 (label = 0b)
Error in tempdir(check) : NA in coercion to boolean
--- failed re-building ‘IRMRI-Example.Rnw’
--- re-building ‘qMRI-Example.Rnw’ using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Loading required package: parallel
Reading RAW images requires to install dcraw, see
http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/
for macOS and Windows
Use awsMethods::setCores(ncores) to specify number of cores for openMP
oro.nifti 0.11.4
--- finished re-building ‘qMRI-Example.Rnw’
make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qMRI.Rcheck/vign_test/qMRI/vignettes'
pdflatex -interaction nonstopmode IRMRI-Example.tex
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./IRMRI-Example.tex
LaTeX2e <2024-11-01> patch level 1
L3 programming layer <2024-12-25>
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/filecontents/filecontents.sty
Package filecontents Warning: This package is obsolete. Disabling it and
(filecontents) passing control to the filecontents environment
(filecontents) defined by the LaTeX kernel.
)
LaTeX Info: Writing file `./qmriIR.bib'.
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.sty
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty))
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(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
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(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty))
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(/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.def))
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(/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def)
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Package biblatex Warning: Using fall-back bibtex backend:
(biblatex) functionality may be reduced/unavailable.
) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.def)
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/standard.bbx))
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(/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-case-expl3.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)))
(/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex/Sweave
.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty))
No file IRMRI-Example.aux.
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx)
No file IRMRI-Example.bbl.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/grfext/grfext.sty
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty))
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
! LaTeX Error: File `IRMRI-Example-concordance.tex' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: tex)
Enter file name:
! Emergency stop.
<read *>
l.54 \input{IRMRI-Example-concordance}
^^M
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on IRMRI-Example.log.
make[1]: *** [Makefile:3: all] Error 1
make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qMRI.Rcheck/vign_test/qMRI/vignettes'
Error in tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qMRI.Rcheck/vign_test/qMRI", :
running 'make' failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.7.8
Check: examples
Result: ERROR
Running examples in ‘qMRI-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estimateIRfluid
> ### Title: Estimate parameters in Inversion Recovery MRI experiments model
> ### for CSF voxel
> ### Aliases: estimateIRfluid
> ### Keywords: models regression
>
> ### ** Examples
>
> dataDir0 <- system.file("extdataIR", package = "qMRI")
> dataDir <- tempdir("IRdata")
Error in tempdir(check) : NA in coercion to boolean
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘IRMRI-Example.Rnw’ using Sweave
Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics:
chunk 2 (label = 0b)
Error in tempdir(check) : NA in coercion to boolean
--- failed re-building ‘IRMRI-Example.Rnw’
--- re-building ‘qMRI-Example.Rnw’ using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Loading required package: parallel
Reading RAW images requires to install dcraw, see
http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/
for macOS and Windows
Use awsMethods::setCores(ncores) to specify number of cores for openMP
oro.nifti 0.11.4
--- finished re-building ‘qMRI-Example.Rnw’
make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qMRI.Rcheck/vign_test/qMRI/vignettes'
pdflatex -interaction nonstopmode IRMRI-Example.tex
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./IRMRI-Example.tex
LaTeX2e <2024-11-01> patch level 1
L3 programming layer <2024-12-25>
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/filecontents/filecontents.sty
Package filecontents Warning: This package is obsolete. Disabling it and
(filecontents) passing control to the filecontents environment
(filecontents) defined by the LaTeX kernel.
)
LaTeX Info: Writing file `./qmriIR.bib'.
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.sty
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty))
(/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.sty
(/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-dm.def)
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def)
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-bibtex.def
Package biblatex Warning: Using fall-back bibtex backend:
(biblatex) functionality may be reduced/unavailable.
) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.def)
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/standard.bbx))
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/cbx/authoryear.cbx)
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-case-expl3.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)))
(/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex/Sweave.s
ty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty))
No file IRMRI-Example.aux.
(/usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx)
No file IRMRI-Example.bbl.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/grfext/grfext.sty
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty))
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
! LaTeX Error: File `IRMRI-Example-concordance.tex' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: tex)
Enter file name:
! Emergency stop.
<read *>
l.54 \input{IRMRI-Example-concordance}
^^M
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on IRMRI-Example.log.
make[1]: *** [Makefile:3: all] Error 1
make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qMRI.Rcheck/vign_test/qMRI/vignettes'
Error in tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qMRI.Rcheck/vign_test/qMRI", :
running 'make' failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.7.8
Check: examples
Result: ERROR
Running examples in ‘qMRI-Ex.R’ failed
The error most likely occurred in:
> ### Name: estimateIRfluid
> ### Title: Estimate parameters in Inversion Recovery MRI experiments model
> ### for CSF voxel
> ### Aliases: estimateIRfluid
> ### Keywords: models regression
>
> ### ** Examples
>
> dataDir0 <- system.file("extdataIR", package = "qMRI")
> dataDir <- tempdir("IRdata")
Error in tempdir(check) : NA in coercion to boolean
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘IRMRI-Example.Rnw’ using Sweave
Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics:
chunk 2 (label = 0b)
Error in tempdir(check) : NA in coercion to boolean
--- failed re-building ‘IRMRI-Example.Rnw’
--- re-building ‘qMRI-Example.Rnw’ using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Loading required package: parallel
Reading RAW images requires to install dcraw, see
http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/
for macOS and Windows
Use awsMethods::setCores(ncores) to specify number of cores for openMP
oro.nifti 0.11.4
--- finished re-building ‘qMRI-Example.Rnw’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/qMRI.Rcheck/vign_test/qMRI/vignettes'
pdflatex -interaction nonstopmode IRMRI-Example.tex
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./IRMRI-Example.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/base/article.cls
Document Class: article 2024/06/29 v1.4n Standard LaTeX document class
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/base/size10.clo))
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/filecontents/filecontents.sty
Package filecontents Warning: This package is obsolete. Disabling it and
(filecontents) passing control to the filecontents environment
(filecontents) defined by the LaTeX kernel.
)
LaTeX Info: Writing file `./qmriIR.bib'.
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/biblatex/biblatex.sty
(/data/gannet2/ripley/2024/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
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(/data/gannet2/ripley/2024/texmf-dist/tex/generic/iftex/iftex.sty)
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(/data/gannet2/ripley/2024/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/graphics/keyval.sty)
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/kvoptions/kvoptions.sty
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty))
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Package biblatex Warning: Using fall-back bibtex backend:
(biblatex) functionality may be reduced/unavailable.
) (/data/gannet2/ripley/2024/texmf-dist/tex/latex/biblatex/biblatex.def)
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx
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(/data/gannet2/ripley/2024/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)))
(/data/gannet/ripley/R/R-clang/share/texmf/tex/latex/Sweave.sty
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/graphics/graphicx.sty
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/graphics/graphics.sty
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(/data/gannet2/ripley/2024/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
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(/data/gannet2/ripley/2024/texmf-dist/tex/latex/base/textcomp.sty)
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/base/fontenc.sty))
No file IRMRI-Example.aux.
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/biblatex/lbx/english.lbx)
No file IRMRI-Example.bbl.
(/data/gannet2/ripley/2024/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
)
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/grfext/grfext.sty
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)) (/data/gannet2/ripley/2024/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
))
! LaTeX Error: File `IRMRI-Example-concordance.tex' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: tex)
Enter file name:
! Emergency stop.
<read *>
l.54 \input{IRMRI-Example-concordance}
^^M
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on IRMRI-Example.log.
make[1]: *** [Makefile:3: all] Error 1
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/qMRI.Rcheck/vign_test/qMRI/vignettes'
Error in tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/qMRI.Rcheck/vign_test/qMRI", :
running 'make' failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.7.8
Check: examples
Result: ERROR
Running examples in 'qMRI-Ex.R' failed
The error most likely occurred in:
> ### Name: estimateIRfluid
> ### Title: Estimate parameters in Inversion Recovery MRI experiments model
> ### for CSF voxel
> ### Aliases: estimateIRfluid
> ### Keywords: models regression
>
> ### ** Examples
>
> dataDir0 <- system.file("extdataIR", package = "qMRI")
> dataDir <- tempdir("IRdata")
Error in tempdir(check) : NA in coercion to Rboolean
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'IRMRI-Example.Rnw' using Sweave
Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics:
chunk 2 (label = 0b)
Error in tempdir(check) : NA in coercion to Rboolean
--- failed re-building 'IRMRI-Example.Rnw'
--- re-building 'qMRI-Example.Rnw' using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Loading required package: parallel
could not determine path to Imagemagick
please set the correct path manually using
'Sys.setenv(ImageMagick='path2imagemagick')'
Reading RAW images requires to install dcraw, see
http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/
for macOS and Windows
Use awsMethods::setCores(ncores) to specify number of cores for openMP
oro.nifti 0.11.4
--- finished re-building 'qMRI-Example.Rnw'
make[1]: Entering directory '/d/RCompile/CRANpkg/local/4.5/qMRI.Rcheck/vign_test/qMRI/vignettes'
pdflatex -interaction nonstopmode IRMRI-Example.tex
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! LaTeX Error: File `IRMRI-Example-concordance.tex' not found.
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l.54 \input{IRMRI-Example-concordance}
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! ==> Fatal error occurred, no output PDF file produced!
Transcript written on IRMRI-Example.log.
make[1]: *** [Makefile:3: all] Error 1
make[1]: Leaving directory '/d/RCompile/CRANpkg/local/4.5/qMRI.Rcheck/vign_test/qMRI/vignettes'
Error in tools::buildVignettes(dir = "d:/Rcompile/CRANpkg/local/4.5/qMRI.Rcheck/vign_test/qMRI", :
running 'make' failed
Execution halted
Flavor: r-devel-windows-x86_64