Last updated on 2026-09-03 07:51:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 9.80 | 168.76 | 178.56 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 6.27 | 114.04 | 120.31 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 7.00 | 109.38 | 116.38 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 7.00 | 130.09 | 137.09 | OK | |
| r-devel-windows-x86_64 | 0.7.0 | 12.00 | 136.00 | 148.00 | ERROR | |
| r-patched-linux-x86_64 | 0.7.0 | 7.70 | 155.95 | 163.65 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 7.79 | 156.58 | 164.37 | OK | |
| r-release-macos-arm64 | 0.7.0 | 2.00 | 49.00 | 51.00 | OK | |
| r-release-macos-x86_64 | 0.7.0 | 6.00 | 208.00 | 214.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 12.00 | 159.00 | 171.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.7.0 | 5.00 | 168.00 | 173.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 15.00 | 220.00 | 235.00 | OK |
Version: 0.7.0
Check: examples
Result: ERROR
Running examples in 'metanetwork-Ex.R' failed
The error most likely occurred in:
> ### Name: diff_plot
> ### Title: plot difference network
> ### Aliases: diff_plot
>
> ### ** Examples
>
> #on Angola dataset
> library(igraph)
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
> library(metanetwork)
>
> data(meta_angola)
>
> diff_plot(g1 = meta_angola$X2003,g2 = meta_angola$X1986,metanetwork = meta_angola,
+ beta = 0.05)
mode is TL-tsne
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
plotting: X2003_Species - X1986_Species
mode is TL-tsne
beta = 0.05
Epoch: Iteration #100 error is: 907.373467952717
Epoch: Iteration #200 error is: 217.111280176298
Epoch: Iteration #300 error is: 217.230024153912
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.7.0
Check: tests
Result: ERROR
Running 'testthat.R' [40s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(metanetwork)
Attaching package: 'metanetwork'
The following object is masked from 'package:base':
print
>
> test_check("metanetwork")
Attaching package: 'igraph'
The following object is masked from 'package:testthat':
compare
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
attaching TL-tsne layout for metaweb_
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 293.384814558999
Epoch: Iteration #200 error is: 69.9291722049666
Epoch: Iteration #300 error is: 69.929984445995
attaching TL-tsne layout for metaweb_
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 293.384869611733
Epoch: Iteration #200 error is: 69.9292052136159
Epoch: Iteration #300 error is: 69.9300565267609
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
attaching group-TL-tsne layout for metaweb_Species
beta = 0.1
attaching group-TL-tsne layout for metaweb at resolution: Phylum
beta = 0.1
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
computing TL-tsne layout for metawebat resolution: Phylum. See attach_layout to store it.
beta = 0.1
Epoch: Iteration #100 error is: 263.617747846807
Epoch: Iteration #200 error is: 63.1419516808075
Epoch: Iteration #300 error is: 63.1421337468394
attaching TL-tsne layout for metaweb_Species
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 838.972758517533
Epoch: Iteration #200 error is: 199.589203152681
Epoch: Iteration #300 error is: 199.58919020088
attaching group-TL-tsne layout for metaweb at resolution: Phylum
beta = 0.1
computing TL-tsne layout for metawebat resolution: Phylum. See attach_layout to store it.
beta = 0.1
Epoch: Iteration #100 error is: 263.794997374089
Epoch: Iteration #200 error is: 63.1865781052592
Epoch: Iteration #300 error is: 63.1867955161567
attaching group-TL-tsne layout for metaweb at resolution: Phylum
beta = 0.1
computing TL-tsne layout for metawebat resolution: Phylum. See attach_layout to store it.
beta = 0.1
Epoch: Iteration #100 error is: 263.793258344449
Epoch: Iteration #200 error is: 63.1823161303674
Epoch: Iteration #300 error is: 63.1824750780045
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
mode is TL-tsne
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
mode is TL-tsne
mode is TL-tsne
plotting: X1986_Species - X2003_Species
mode is TL-tsne
beta = 0.1
Epoch: Iteration #100 error is: 838.876222153761
Epoch: Iteration #200 error is: 199.576488521012
Epoch: Iteration #300 error is: 199.576452337934
Saving _problems/test-diffplot-26.R
attaching group-TL-tsne layout for metaweb at resolution: Phylum
beta = 0.1
computing TL-tsne layout for metawebat resolution: Phylum. See attach_layout to store it.
beta = 0.1
Epoch: Iteration #100 error is: 263.704001671618
Epoch: Iteration #200 error is: 63.164555570201
Epoch: Iteration #300 error is: 63.1646183307466
mode is group-TL-tsne
plotting: X1986_Species - X2003_Species
mode is group-TL-tsne
Saving _problems/test-diffplot-45.R
mode is TL-tsne
plotting: X1986_Species - X2003_Species
mode is TL-tsne
beta = 0.1
Epoch: Iteration #100 error is: 838.877500584973
Epoch: Iteration #200 error is: 199.576482009483
Epoch: Iteration #300 error is: 199.576452337935
Saving _problems/test-diffplot-53.R
mode is aa
mode is TL-tsne
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
mode is TL-tsne
beta = 0.1
Epoch: Iteration #100 error is: 838.972780400546
Epoch: Iteration #200 error is: 199.589202169961
Epoch: Iteration #300 error is: 199.589190200871
Saving _problems/test-ggmetanet-28.R
attaching group-TL-tsne layout for metaweb at resolution: Phylum
beta = 0.1
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
computing TL-tsne layout for metawebat resolution: Phylum. See attach_layout to store it.
beta = 0.1
Epoch: Iteration #100 error is: 263.770635052599
Epoch: Iteration #200 error is: 63.1804168381646
Epoch: Iteration #300 error is: 63.1806131983161
mode is group-TL-tsne
Saving _problems/test-ggmetanet-53.R
mode is TL-tsne
beta = 0.1
Epoch: Iteration #100 error is: 838.971968812377
Epoch: Iteration #200 error is: 199.589205010828
Epoch: Iteration #300 error is: 199.589190200879
Saving _problems/test-ggmetanet-61.R
mode is TL-tsne
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
too many groups, assigning colors and shapes
plotting legend
Saving _problems/test-ggmetanet-74.R
computing trophic levels
attaching layout for beta= 0.1
attaching TL-tsne layout for metaweb_
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 293.384896242535
Epoch: Iteration #200 error is: 69.9473053341918
Epoch: Iteration #300 error is: 69.9487087670946
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
append aggregated networks
computing trophic levels
attaching layout for beta= 0.1
attaching TL-tsne layout for metaweb_Species
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 838.971148329278
Epoch: Iteration #200 error is: 199.589209455315
Epoch: Iteration #300 error is: 199.589190200872
building metanetwork
computing trophic levels
attaching layout for beta= 0.1
attaching TL-tsne layout for metaweb_
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 293.384919940425
Epoch: Iteration #200 error is: 69.892730196808
Epoch: Iteration #300 error is: 69.8929589306285
building metanetwork
appending aggregated networks
computing trophic levels
attaching layout for beta= 0.1
attaching TL-tsne layout for metaweb_Species
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 838.972789262868
Epoch: Iteration #200 error is: 199.589206067146
Epoch: Iteration #300 error is: 199.589190200876
Saving _problems/test-plot_trophicTable-29.R
object of class metanetwork
object of class metanetwork
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
This graph was created by an old(er) igraph version.
i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
For now we convert it on the fly...
beta = 0.1
Epoch: Iteration #100 error is: 838.970833125639
Epoch: Iteration #200 error is: 199.58920420377
Epoch: Iteration #300 error is: 199.58919020088
x_max = 1338.60426010917
y_max = 340.6389605737
attaching TL-tsne layout for metaweb_Species
beta = 0.1
beta = 0.1
Epoch: Iteration #100 error is: 838.973926673508
Epoch: Iteration #200 error is: 199.589201288348
Epoch: Iteration #300 error is: 199.589190200876
x_max = 1259.92651522773
y_max = 340.638960573245
x_max = 1259.92651522773
y_max = 340.638960573245
mode is TL-tsne
plotting: X1986_Species - X2003_Species
beta = 0.1
Epoch: Iteration #100 error is: 838.876345329476
Epoch: Iteration #200 error is: 199.576473683984
Epoch: Iteration #300 error is: 199.576452337933
x_max = 1356.85756899361
y_max = 351.624293300845
[ FAIL 8 | WARN 328 | SKIP 0 | PASS 48 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-diffplot.R:26:3'): test of diffplot mode and layout metaweb ────
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-diffplot.R:26:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::diff_plot(meta_angola, g1 = meta_angola$X1986, g2 = meta_angola$X2003)
5. │ └─metanetwork::ggmetanet(...)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-diffplot.R:43:3'): group-TL-tsne layout ────────────────────────
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-diffplot.R:43:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::diff_plot(...)
5. │ └─metanetwork::ggmetanet(...)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-diffplot.R:49:3'): test of alpha options ───────────────────────
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-diffplot.R:49:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::diff_plot(...)
5. │ └─metanetwork::ggmetanet(...)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-ggmetanet.R:28:3'): test of ggmetanet mode and layout metaweb ──
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(ggmetanet(meta_angola), "ggplot") at test-ggmetanet.R:28:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::ggmetanet(meta_angola)
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-ggmetanet.R:53:3'): group-TL-tsne layout ───────────────────────
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-ggmetanet.R:53:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::ggmetanet(meta_angola, mode = "group-TL-tsne")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-ggmetanet.R:57:3'): test of alpha options ──────────────────────
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-ggmetanet.R:57:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::ggmetanet(...)
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-ggmetanet.R:74:3'): test legend for large networks ─────────────
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-ggmetanet.R:74:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─metanetwork::ggmetanet(meta_vrtb, legend = "group", beta = 4e-06)
8. └─base::loadNamespace(x)
9. └─base::namespaceImportFrom(...)
10. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-plot_trophicTable.R:29:3'): test if output is ggplot2 object ───
Error: object 'ggcoef_multinom' is not exported by 'namespace:ggstats'
Backtrace:
▆
1. ├─testthat::expect_is(plot_trophicTable(meta_angola), "ggplot") at test-plot_trophicTable.R:29:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─metanetwork::plot_trophicTable(meta_angola)
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
[ FAIL 8 | WARN 328 | SKIP 0 | PASS 48 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64