Last updated on 2024-07-24 12:21:28 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dynaSpec | 3 | 10 | |
| NatureSounds | 9 | 4 | |
| ohun | 6 | 6 | 1 |
| Rraven | 6 | 1 | 6 |
| sketchy | 2 | 11 | |
| warbleR | 4 | 4 | 5 |
Current CRAN status: NOTE: 3, OK: 10
Version: 1.0.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘NatureSounds’ ‘av’ ‘magrittr’ ‘stats’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: Rd cross-references
Result: NOTE
Undeclared package ‘warbleR’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘warbleR’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 9, OK: 4
Version: 1.0.4
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 3.8Mb
doc 1.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘tuneR’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 6, NOTE: 6, OK: 1
Version: 1.0.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: replacing previous import ‘seewave::wav2flac’ by ‘warbleR::wav2flac’ when loading ‘ohun’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: dependencies in R code
Result: WARN
Missing or unexported objects:
‘warbleR::duration_wavs’ ‘warbleR::try_na’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ohun-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: consensus_detection
> ### Title: Remove ambiguous detections
> ### Aliases: consensus_detection
>
> ### ** Examples
>
> {
+ # load example data
+ data("lbh1", "lbh_reference")
+
+ # save sound files
+ tuneR::writeWave(lbh1, file.path(tempdir(), "lbh2.wav"))
+
+ # template for the first sound file in 'lbh_reference'
+ templ1 <- lbh_reference[1, ]
+
+ # generate template correlations
+ tc <- template_correlator(
+ templates = templ1, path = tempdir(),
+ files = "lbh2.wav"
+ )
+
+ # template detection
+ td <- template_detector(template.correlations = tc, threshold = 0.12)
+
+ # this detection generates 2 split positives
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # label detection
+ ltd <- label_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # now they can be filter to keep the detection with the highest score for each split
+ ftd <- consensus_detection(ltd, by = "scores")
+
+ # splits must be 0
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = ftd
+ )
+ }
all selections are OK
Error: 'try_na' is not an exported object from 'namespace:warbleR'
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘energy_based_detection.Rmd’ using rmarkdown
Quitting from lines 249-280 [unnamed-chunk-13] (energy_based_detection.Rmd)
Error: processing vignette 'energy_based_detection.Rmd' failed with diagnostics:
could not find function "sim_songs"
--- failed re-building ‘energy_based_detection.Rmd’
--- re-building ‘intro_to_ohun.Rmd’ using rmarkdown
--- finished re-building ‘intro_to_ohun.Rmd’
--- re-building ‘template_based_detection.Rmd’ using rmarkdown
Quitting from lines 150-155 [unnamed-chunk-9] (template_based_detection.Rmd)
Error: processing vignette 'template_based_detection.Rmd' failed with diagnostics:
'try_na' is not an exported object from 'namespace:warbleR'
--- failed re-building ‘template_based_detection.Rmd’
SUMMARY: processing the following files failed:
‘energy_based_detection.Rmd’ ‘template_based_detection.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.0.1
Check: installed package size
Result: NOTE
installed size is 6.8Mb
sub-directories of 1Mb or more:
doc 6.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ohun-Ex.R’ failed
The error most likely occurred in:
> ### Name: consensus_detection
> ### Title: Remove ambiguous detections
> ### Aliases: consensus_detection
>
> ### ** Examples
>
> {
+ # load example data
+ data("lbh1", "lbh_reference")
+
+ # save sound files
+ tuneR::writeWave(lbh1, file.path(tempdir(), "lbh2.wav"))
+
+ # template for the first sound file in 'lbh_reference'
+ templ1 <- lbh_reference[1, ]
+
+ # generate template correlations
+ tc <- template_correlator(
+ templates = templ1, path = tempdir(),
+ files = "lbh2.wav"
+ )
+
+ # template detection
+ td <- template_detector(template.correlations = tc, threshold = 0.12)
+
+ # this detection generates 2 split positives
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # label detection
+ ltd <- label_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # now they can be filter to keep the detection with the highest score for each split
+ ftd <- consensus_detection(ltd, by = "scores")
+
+ # splits must be 0
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = ftd
+ )
+ }
all selections are OK
Error: 'try_na' is not an exported object from 'namespace:warbleR'
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘energy_based_detection.Rmd’ using rmarkdown
Quitting from lines 249-280 [unnamed-chunk-13] (energy_based_detection.Rmd)
Error: processing vignette 'energy_based_detection.Rmd' failed with diagnostics:
could not find function "sim_songs"
--- failed re-building ‘energy_based_detection.Rmd’
--- re-building ‘intro_to_ohun.Rmd’ using rmarkdown
--- finished re-building ‘intro_to_ohun.Rmd’
--- re-building ‘template_based_detection.Rmd’ using rmarkdown
Quitting from lines 150-155 [unnamed-chunk-9] (template_based_detection.Rmd)
Error: processing vignette 'template_based_detection.Rmd' failed with diagnostics:
'try_na' is not an exported object from 'namespace:warbleR'
--- failed re-building ‘template_based_detection.Rmd’
SUMMARY: processing the following files failed:
‘energy_based_detection.Rmd’ ‘template_based_detection.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 6, NOTE: 1, OK: 6
Version: 1.0.13
Check: Rd cross-references
Result: WARN
Missing link or links in Rd file 'exp_est.Rd':
‘[warbleR]{resample_est_waves}’
Missing link or links in Rd file 'extract_ts.Rd':
‘[warbleR]{dfDTW}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64
Version: 1.0.13
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Rraven.Rmd’ using rmarkdown
Quitting from lines 569-588 [unnamed-chunk-36] (Rraven.Rmd)
Error: processing vignette 'Rraven.Rmd' failed with diagnostics:
could not find function "specan"
--- failed re-building ‘Rraven.Rmd’
SUMMARY: processing the following file failed:
‘Rraven.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.0.13
Check: Rd cross-references
Result: WARN
Missing link or links in Rd file 'exp_est.Rd':
‘[warbleR]{resample_est_waves}’
Missing link or links in Rd file 'extract_ts.Rd':
‘[warbleR]{dfDTW}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
exp_raven.Rd: warbleR
match_wav_case.Rd: warbleR
raven_batch_detec.Rd: warbleR
relabel_colms.Rd: warbleR
selection_files.Rd: warbleR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.13
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘NatureSounds’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.13
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Rraven.Rmd’ using rmarkdown
Quitting from lines 569-588 [unnamed-chunk-36] (Rraven.Rmd)
Error: processing vignette 'Rraven.Rmd' failed with diagnostics:
could not find function "specan"
--- failed re-building ‘Rraven.Rmd’
SUMMARY: processing the following file failed:
‘Rraven.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 1.0.13
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
exp_raven.Rd: warbleR
match_wav_case.Rd: warbleR
raven_batch_detec.Rd: warbleR
relabel_colms.Rd: warbleR
selection_files.Rd: warbleR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 1.0.13
Check: Rd cross-references
Result: WARN
Missing link or links in documentation object 'exp_est.Rd':
'[warbleR]{resample_est_waves}'
Missing link or links in documentation object 'extract_ts.Rd':
'[warbleR]{dfDTW}'
See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 1.0.3
Check: data for non-ASCII characters
Result: NOTE
Note: found 2 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 4, NOTE: 4, OK: 5
Version: 1.1.31
Check: installed package size
Result: NOTE
installed size is 8.7Mb
sub-directories of 1Mb or more:
doc 7.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.31
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘annotation_data_format.Rmd’ using rmarkdown
sh: wget: command not found
Quitting from lines 681-694 [downloading rds] (annotation_data_format.Rmd)
Error: processing vignette 'annotation_data_format.Rmd' failed with diagnostics:
'wget' call had nonzero exit status
--- failed re-building ‘annotation_data_format.Rmd’
--- re-building ‘warbleR.Rmd’ using rmarkdown
--- finished re-building ‘warbleR.Rmd’
--- re-building ‘warbleR_workflow_01.Rmd’ using rmarkdown
--- finished re-building ‘warbleR_workflow_01.Rmd’
--- re-building ‘warbleR_workflow_02.Rmd’ using rmarkdown
--- finished re-building ‘warbleR_workflow_02.Rmd’
--- re-building ‘warbleR_workflow_03.Rmd’ using rmarkdown
--- finished re-building ‘warbleR_workflow_03.Rmd’
SUMMARY: processing the following file failed:
‘annotation_data_format.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.1.30
Check: installed package size
Result: NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
R 1.1Mb
doc 6.3Mb
Flavor: r-release-windows-x86_64
Version: 1.1.31
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘annotation_data_format.Rmd’
...
> download.file(url = URL, destfile = file.path(tempdir(),
+ "est_inquiry.RDS"), method = "wget")
sh: wget: command not found
When sourcing ‘annotation_data_format.R’:
Error: 'wget' call had nonzero exit status
In addition: Warning message:
In system(paste("wget", paste(extra, collapse = " "), shQuote(url), :
error in running command
Execution halted
‘annotation_data_format.Rmd’ using ‘UTF-8’... failed
‘warbleR.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘warbleR_workflow_01.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘warbleR_workflow_02.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘warbleR_workflow_03.Rmd’ using ‘UTF-8’... [1s/1s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.1.31
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘annotation_data_format.Rmd’ using rmarkdown
sh: wget: command not found
Quitting from lines 681-694 [downloading rds] (annotation_data_format.Rmd)
Error: processing vignette 'annotation_data_format.Rmd' failed with diagnostics:
'wget' call had nonzero exit status
--- failed re-building ‘annotation_data_format.Rmd’
--- re-building ‘warbleR.Rmd’ using rmarkdown
--- finished re-building ‘warbleR.Rmd’
--- re-building ‘warbleR_workflow_01.Rmd’ using rmarkdown
--- finished re-building ‘warbleR_workflow_01.Rmd’
--- re-building ‘warbleR_workflow_02.Rmd’ using rmarkdown
--- finished re-building ‘warbleR_workflow_02.Rmd’
--- re-building ‘warbleR_workflow_03.Rmd’ using rmarkdown
--- finished re-building ‘warbleR_workflow_03.Rmd’
SUMMARY: processing the following file failed:
‘annotation_data_format.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.31
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘annotation_data_format.Rmd’
...
> download.file(url = URL, destfile = file.path(tempdir(),
+ "est_inquiry.RDS"), method = "wget")
sh: wget: command not found
When sourcing ‘annotation_data_format.R’:
Error: 'wget' call had nonzero exit status
In addition: Warning message:
In system(paste("wget", paste(extra, collapse = " "), shQuote(url), :
error in running command
Execution halted
‘annotation_data_format.Rmd’ using ‘UTF-8’... failed
‘warbleR.Rmd’ using ‘UTF-8’... [1s/2s] OK
‘warbleR_workflow_01.Rmd’ using ‘UTF-8’... [1s/2s] OK
‘warbleR_workflow_02.Rmd’ using ‘UTF-8’... [1s/2s] OK
‘warbleR_workflow_03.Rmd’ using ‘UTF-8’... [1s/2s] OK
Flavor: r-oldrel-macos-x86_64