Last updated on 2025-08-01 21:50:29 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| caretSDM | 1 | 12 | |
| chooseGCM | 1 | 10 | 2 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [219s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(caretSDM)
>
> test_check("caretSDM")
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
Linking to GEOS 3.13.1, GDAL 3.11.0, PROJ 9.6.0; sf_use_s2() is TRUE
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
s1_names s2_names
1 bio1 wc2.1_10m_bio_1
2 bio12 wc2.1_10m_bio_12
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
Cell_ids identified, removing duplicated cell_id.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 1 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 0 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
Cell_ids identified, removing duplicated cell_id.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 2 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 0 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 31 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 5 records.
Testing coordinate validity
Removed 0 records.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 31 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 5 records.
Testing coordinate validity
Removed 0 records.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
Cell_ids identified, removing duplicated cell_id.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
Loading required package: ggplot2
Loading required package: lattice
Attaching package: 'caret'
The following object is masked from 'package:caretSDM':
predictors
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Projecting: 1/2"
[1] "Projecting: 2/2"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "teste"
[1] "Araucaria angustifolia"
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
trying to read file: test.gpkg
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
[1] "Projecting: 1/1"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
[ FAIL 1 | WARN 0 | SKIP 31 | PASS 574 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test-add_predictors.R:391:3', 'test-add_predictors.R:399:2',
'test-add_predictors.R:419:2', 'test-add_predictors.R:432:2',
'test-input_sdm.R:11:3', 'test-names.R:37:3', 'test-occurrences_sdm.R:335:3',
'test-pca_predictors.R:15:3', 'test-pca_predictors.R:32:3',
'test-pdp_sdm.R:2:3', 'test-predict_sdm.R:40:3', 'test-predict_sdm.R:76:3',
'test-predict_sdm.R:110:3', 'test-sdm_area.R:43:3', 'test-sdm_area.R:222:3',
'test-sdm_area.R:228:3', 'test-sdm_area.R:235:3', 'test-sdm_area.R:273:3',
'test-sdm_area.R:295:3', 'test-sdm_area.R:321:3', 'test-sdm_area.R:349:3',
'test-sdm_area.R:356:3', 'test-sdm_area.R:362:3', 'test-sdm_area.R:369:3',
'test-sdm_area.R:377:3', 'test-sdm_area.R:383:3', 'test-train_sdm.R:33:3',
'test-train_sdm.R:50:3', 'test-train_sdm.R:67:3', 'test-train_sdm.R:82:3',
'test-train_sdm.R:98:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-data_clean.R:4:3'): data_clean - normal path with sdm_area ───
`... <- NULL` did not throw the expected warning.
[ FAIL 1 | WARN 0 | SKIP 31 | PASS 574 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 10, OK: 2
Version: 1.0.2
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘closestdist_gcms.Rd’ ‘compare_gcms.R’ ‘compare_gcms.Rd’
‘cor_gcms.Rd’ ‘dist_gcms.Rd’ ‘env_gcms.Rd’ ‘flatten_gcms.Rd’
‘hclust_gcms.Rd’ ‘kmeans_gcms.R’ ‘kmeans_gcms.Rd’
‘montecarlo_gcms.Rd’ ‘optk_gcms.Rd’ ‘summary_gcms.Rd’
‘transform_gcms.R’ ‘transform_gcms.Rd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 1.0.2
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘compare_gcms.R’ ‘kmeans_gcms.R’ ‘transform_gcms.R’
Flavor: r-release-macos-x86_64
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'README.Rmd' using rmarkdown
File man/figures/logo.png not found in resource path
Error: processing vignette 'README.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'README.Rmd'
SUMMARY: processing the following file failed:
'README.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64