Last updated on 2024-07-24 12:21:27 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| autonewsmd | 4 | 9 | |
| BiasCorrector | 10 | 3 | |
| DQAgui | 13 | ||
| DQAstats | 13 | ||
| kdry | 13 | ||
| mlexperiments | 2 | 11 | |
| mllrnrs | 2 | 11 | |
| mlsurvlrnrs | 13 | ||
| rBiasCorrection | 13 | ||
| sjtable2df | 1 | 12 |
Current CRAN status: ERROR: 4, OK: 9
Version: 0.0.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Error in `find_quarto()`: Quarto command-line tools path not found!
Please make sure you have installed and added Quarto to your PATH or set the
QUARTO_PATH environment variable.
Backtrace:
▆
1. └─an$write(force = TRUE) at test-autonewsmd.R:83:3
2. └─autonewsmd:::write_autonewsmd(self, private, force, con)
3. └─quarto::quarto_render(input = template_file, output_format = "md")
4. └─quarto:::find_quarto()
5. └─cli::cli_abort(quarto_not_found_msg)
6. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 7 ]
Error: Test failures
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.0.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Error in `find_quarto()`: Quarto command-line tools path not found!
Please make sure you have installed and added Quarto to your PATH or set the
QUARTO_PATH environment variable.
Backtrace:
▆
1. └─an$write(force = TRUE) at test-autonewsmd.R:83:3
2. └─autonewsmd:::write_autonewsmd(self, private, force, con)
3. └─quarto::quarto_render(input = template_file, output_format = "md")
4. └─quarto:::find_quarto()
5. └─cli::cli_abort(quarto_not_found_msg)
6. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 7 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.0.8
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘autonewsmd.Rmd’
...
> an$write(force = TRUE)
When sourcing ‘autonewsmd.R’:
Error: Quarto command-line tools path not found!
Please make sure you have installed and added Quarto to your PATH or set the
QUARTO_PATH environment variable.
Execution halted
‘autonewsmd.Rmd’ using ‘UTF-8’... failed
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 0.2.2
Check: Rd files
Result: NOTE
checkRd: (-1) module_calibrationfile_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_correctedplots_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_correctedstats_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_fileupload_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_info_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_log_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_modelselection_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_plotting_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_results_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_settings_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
checkRd: (-1) module_statistics_server.Rd:19: Lost braces; missing escapes or markup?
19 | expression: input_re = reactive({input})}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 2, OK: 11
Version: 0.0.4
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘mlexperiments_rpart_regression.qmd’
...
> preds_rpart <- mlexperiments::predictions(object = validator,
+ newdata = test_x)
> preds_lm <- mlexperiments::predictions(object = validator_lm,
+ newdata = test_x)
When sourcing ‘mlexperiments_rpart_regression.R’:
Error: variable 'chas' was fitted with type "numeric" but type "factor" was supplied
Execution halted
‘mlexperiments_knn_binary.qmd’ using ‘UTF-8’... [3s/10s] OK
‘mlexperiments_knn_multiclass.qmd’ using ‘UTF-8’... [25s/42s] OK
‘mlexperiments_rpart_binary.qmd’ using ‘UTF-8’... [4s/11s] OK
‘mlexperiments_rpart_multiclass.qmd’ using ‘UTF-8’... [49s/78s] OK
‘mlexperiments_rpart_regression.qmd’ using ‘UTF-8’... failed
‘mlexperiments_starter.qmd’ using ‘UTF-8’... [49s/82s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.0.4
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘mlexperiments_rpart_regression.qmd’
...
> preds_rpart <- mlexperiments::predictions(object = validator,
+ newdata = test_x)
> preds_lm <- mlexperiments::predictions(object = validator_lm,
+ newdata = test_x)
When sourcing ‘mlexperiments_rpart_regression.R’:
Error: variable 'chas' was fitted with type "numeric" but type "factor" was supplied
Execution halted
‘mlexperiments_knn_binary.qmd’ using ‘UTF-8’... [4s/20s] OK
‘mlexperiments_knn_multiclass.qmd’ using ‘UTF-8’... [36s/96s] OK
‘mlexperiments_rpart_binary.qmd’ using ‘UTF-8’... [5s/22s] OK
‘mlexperiments_rpart_multiclass.qmd’ using ‘UTF-8’... [66s/151s] OK
‘mlexperiments_rpart_regression.qmd’ using ‘UTF-8’... failed
‘mlexperiments_starter.qmd’ using ‘UTF-8’... [64s/140s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 0.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/151s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─mlexperiments:::.run_tuning(self = self, private = private, optimizer = optimizer)
10. └─mlexperiments:::.run_optimizer(...)
11. └─optimizer$execute(x = private$x, y = private$y, method_helper = private$method_helper)
12. ├─base::do.call(...)
13. └─mlexperiments (local) `<fn>`(...)
14. ├─base::do.call(ParBayesianOptimization::bayesOpt, args)
15. └─ParBayesianOptimization (local) `<fn>`(...)
[ FAIL 5 | WARN 1 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.0.4
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘mllrnrs_glmnet_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_glmnet_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
when running code in ‘mllrnrs_lightgbm_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_lightgbm_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
when running code in ‘mllrnrs_ranger_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_ranger_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
when running code in ‘mllrnrs_xgboost_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_xgboost_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
‘mllrnrs_glmnet_binary.qmd’ using ‘UTF-8’... [6s/71s] OK
‘mllrnrs_glmnet_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_glmnet_regression.qmd’ using ‘UTF-8’... [4s/50s] OK
‘mllrnrs_lightgbm_binary.qmd’ using ‘UTF-8’... [4s/19s] OK
‘mllrnrs_lightgbm_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_lightgbm_regression.qmd’ using ‘UTF-8’... [36s/56s] OK
‘mllrnrs_ranger_binary.qmd’ using ‘UTF-8’... [8s/15s] OK
‘mllrnrs_ranger_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_ranger_regression.qmd’ using ‘UTF-8’... [10s/16s] OK
‘mllrnrs_xgboost_binary.qmd’ using ‘UTF-8’... [4s/18s] OK
‘mllrnrs_xgboost_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_xgboost_regression.qmd’ using ‘UTF-8’... [6s/20s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [25s/191s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─mlexperiments:::.run_tuning(self = self, private = private, optimizer = optimizer)
10. └─mlexperiments:::.run_optimizer(...)
11. └─optimizer$execute(x = private$x, y = private$y, method_helper = private$method_helper)
12. ├─base::do.call(...)
13. └─mlexperiments (local) `<fn>`(...)
14. ├─base::do.call(ParBayesianOptimization::bayesOpt, args)
15. └─ParBayesianOptimization (local) `<fn>`(...)
[ FAIL 5 | WARN 1 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.0.4
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘mllrnrs_glmnet_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_glmnet_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
when running code in ‘mllrnrs_lightgbm_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_lightgbm_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
when running code in ‘mllrnrs_ranger_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_ranger_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
when running code in ‘mllrnrs_xgboost_multiclass.qmd’
...
> validator$set_data(x = train_x, y = train_y)
> validator_results <- validator$execute()
CV fold: Fold1
When sourcing ‘mllrnrs_xgboost_multiclass.R’:
Error: late fail: `case_weights` must be of same length as `y`
Execution halted
‘mllrnrs_glmnet_binary.qmd’ using ‘UTF-8’... [6s/72s] OK
‘mllrnrs_glmnet_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_glmnet_regression.qmd’ using ‘UTF-8’... [6s/71s] OK
‘mllrnrs_lightgbm_binary.qmd’ using ‘UTF-8’... [7s/40s] OK
‘mllrnrs_lightgbm_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_lightgbm_regression.qmd’ using ‘UTF-8’... [52s/83s] OK
‘mllrnrs_ranger_binary.qmd’ using ‘UTF-8’... [11s/22s] OK
‘mllrnrs_ranger_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_ranger_regression.qmd’ using ‘UTF-8’... [14s/29s] OK
‘mllrnrs_xgboost_binary.qmd’ using ‘UTF-8’... [6s/33s] OK
‘mllrnrs_xgboost_multiclass.qmd’ using ‘UTF-8’... failed
‘mllrnrs_xgboost_regression.qmd’ using ‘UTF-8’... [8s/27s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(sjtable2df)
>
> test_check("sjtable2df")
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
[ FAIL 1 | WARN 5 | SKIP 5 | PASS 18 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-mtab2df.R:48:5', 'test-mtab2df.R:136:5',
'test-xtab2df.R:36:5', 'test-xtab2df.R:206:5', 'test-xtab2df.R:253:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mtab2df.R:134:5'): correct functioning of mtab2df: glmer ─────
nrow(final_tab) == 10 is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 5 | SKIP 5 | PASS 18 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64