Last updated on 2025-06-07 12:50:04 CEST.
| Package | ERROR | OK |
|---|---|---|
| airqualityES | 13 | |
| geneHummus | 13 | |
| refseqR | 1 | 12 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
{"error":"error forwarding request /entrez/eutils/efetch.fcgi?db=nuccore&rettype=gp&retmode=&id=XM_004487701&email=david.winter%40gmail.com&tool=rentrez","api-key":"129.217.207.203","type":"ip",
"status":"ok"}
---
Backtrace:
▆
1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60)
2. ├─base::toString(refseq_CDSseq(transcript))
3. └─refseqR::refseq_CDSseq(transcript)
4. └─refseqR::refseq_CDScoords(transcript)
5. └─rentrez::entrez_fetch(db = "nuccore", id = x, rettype = "gp")
6. ├─base::do.call(make_entrez_query, args)
7. └─rentrez (local) `<fn>`(...)
8. └─rentrez:::entrez_check(response)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 500
{"error":"error forwarding request /entrez/eutils/efetch.fcgi?db=nuccore&rettype=gp&retmode=&id=XM_004487701&email=david.winter%40gmail.com&tool=rentrez","api-key":"129.217.207.203","type":"ip",
"status":"ok"}
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64