Last updated on 2024-12-23 12:49:42 CET.
| Package | ERROR | NOTE |
|---|---|---|
| doolkit | 2 | 11 |
Current CRAN status: ERROR: 2, NOTE: 11
Version: 1.42.2
Check: Rd files
Result: NOTE
checkRd: (-1) dkprofile.Rd:64: Lost braces
64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
| ^
checkRd: (-1) dne.Rd:45: Lost braces
45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
| ^
checkRd: (-1) dne.Rd:47: Lost braces
47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
| ^
checkRd: (-1) inclin.Rd:28: Lost braces
28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
| ^
checkRd: (-1) oedist.Rd:43: Lost braces
43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
| ^
checkRd: (-1) oedist.Rd:45: Lost braces
45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
| ^
checkRd: (-1) oedist.Rd:47: Lost braces
47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
| ^
checkRd: (-1) oedist.Rd:49: Lost braces
49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
| ^
checkRd: (-1) opc.Rd:36: Lost braces
36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
| ^
checkRd: (-1) opcr.Rd:30: Lost braces
30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
| ^
checkRd: (-1) rfi.Rd:34: Lost braces
34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
| ^
checkRd: (-1) rfi.Rd:35: Lost braces
35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
| ^
checkRd: (-1) rrate.Rd:34: Lost braces
34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
| ^
checkRd: (-1) shape.index.Rd:44: Lost braces
44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
| ^
checkRd: (-1) shape.index.Rd:46: Lost braces
46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
| ^
checkRd: (-1) shape.index.Rd:48: Lost braces
48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.42.2
Check: installed package size
Result: NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
R 2.1Mb
data 2.0Mb
extdata 2.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.42.2
Check: examples
Result: ERROR
Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:
> ### Name: dkborder
> ### Title: dkborder
> ### Aliases: dkborder
>
> ### ** Examples
>
> border <- dkborder(dkmodel$cusp)
>
> # Map the border in orange:
> is_border <- rep(1, Rvcg::nfaces(dkmodel$cusp))
> is_border[border] <- 2
> dkmap(dkmodel$cusp, is_border, col = c("white", "#E69F00"), col.levels = 2, legend = FALSE,
+ scalebar = FALSE, smooth = FALSE)
Warning in normalizePath(texture) :
path[1]="/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpVZL5EK/file7ab930bbc064.png": No such file or directory
Warning in rgl.material0(color = "white", alpha = 1, lit = FALSE, ambient = "#000000", :
RGL: Pixmap load: unable to open file '/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpVZL5EK/file7ab930bbc064.png' for reading
>
> # Compare with vcgBorder from the R package Rvcg, in blue:
> vcgborder <- which(Rvcg::vcgBorder(dkmodel$cusp)$borderit == TRUE)
> is_border[vcgborder] <- 3
> dkmap(dkmodel$cusp, is_border, col = c("white", "#E69F00", "#56B4E9"), col.levels = 3,
+ legend = FALSE, scalebar = FALSE, smooth = FALSE)
Flavor: r-release-macos-arm64
Version: 1.42.2
Check: examples
Result: ERROR
Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:
> ### Name: dkcrop
> ### Title: crop a mesh
> ### Aliases: dkcrop
>
> ### ** Examples
>
> #Crop above a certain threshold:
> mythreshold <- quantile(elev(dkmodel$basin), 0.5)
> mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin),
+ lwr.limit = mythreshold)
> mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork)
> dkmap(mynewmesh, elev(mynewmesh))
Flavor: r-release-macos-x86_64