Last updated on 2025-05-11 12:50:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.3 | 9.53 | 193.54 | 203.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.3 | 7.06 | 147.44 | 154.50 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.3 | 328.49 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.3 | 337.45 | OK | |||
| r-devel-windows-x86_64 | 0.0.3 | 11.00 | 200.00 | 211.00 | OK | |
| r-patched-linux-x86_64 | 0.0.3 | 9.48 | 191.34 | 200.82 | OK | |
| r-release-linux-x86_64 | 0.0.3 | 10.01 | 187.61 | 197.62 | OK | |
| r-release-macos-arm64 | 0.0.3 | 103.00 | ERROR | |||
| r-release-macos-x86_64 | 47.00 | ERROR | ||||
| r-release-windows-x86_64 | 0.0.3 | 12.00 | 193.00 | 205.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.3 | 104.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.0.3 | 97.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.0.3 | 15.00 | 238.00 | 253.00 | OK |
Version: 0.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘gaawr2.Rmd’ using rmarkdown
Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75''
running: bash -c "export message=\"Hello, world!\"
echo \"print('\$message')\" > hello.R
R CMD BATCH hello.R
R --no-save -q < hello.R
R --no-save -q <<END
message <- Sys.getenv(\"message\"); print(message)
source(\"hello.R\")
END
echo \${message} | \\
Rscript -e '
message <- scan(\"stdin\", what=\"\", sep=\"\\n\", quiet=TRUE);
write.table(message, col.names=FALSE, row.names=FALSE,
quote=FALSE)
' | \\
cat
rm hello.*"
Quitting from gaawr2.Rmd:409-415 [ensdb]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found
---
Backtrace:
▆
1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75)
2. └─base::.handleSimpleError(...)
3. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gaawr2.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found
--- failed re-building ‘gaawr2.Rmd’
--- re-building ‘web.Rmd’ using rmarkdown
[WARNING] Citeproc: citation tsv not found
--- finished re-building ‘web.Rmd’
SUMMARY: processing the following file failed:
‘gaawr2.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64
Version: 0.0.3
Check: PDF version of manual
Result: ERROR
Rd conversion errors:
Error in writeLines("\\usepackage{makeidx}", out) :
Error writing to connection
Flavor: r-release-macos-x86_64
Version: 0.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
Error in saveRDS(list(base = base, value = ret0), dest) :
error writing to connection
Calls: <Anonymous> -> rownames -> %||% -> <Anonymous> -> saveRDS
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.0.3
Check: PDF version of manual
Result: WARN
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
./Rd2.tex:2: LaTeX Error: Can be used only in preamble.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
./Rd2.tex:3: LaTeX Error: Can be used only in preamble.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
./Rd2.tex:4: LaTeX Error: Can be used only in preamble.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
./Rd2.tex:7: LaTeX Error: Can be used only in preamble.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
./Rd2.tex:8: LaTeX Error: Can be used only in preamble.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Emergency stop.
<*> \input ./Rd2.tex \input ./Rd2.tex
*** (job aborted, no legal \end found)
! ==> Fatal error occurred, no output PDF file produced!
Flavor: r-oldrel-macos-x86_64
Version: 0.0.3
Check: PDF version of manual without index
Result: ERROR
Flavor: r-oldrel-macos-x86_64