Last updated on 2024-12-23 12:49:41 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| deepdep | 13 | ||
| tidysq | 8 | 4 | 1 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 8, NOTE: 4, OK: 1
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [14s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [14s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [20s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [14s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [13s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.2
Check: installed package size
Result: NOTE
installed size is 46.4Mb
sub-directories of 1Mb or more:
libs 45.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ──
alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values.
* Only in `actual`: NA
* Only in `expected`: NA
── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values.
* Only in `actual`: NA
── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ──
alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values.
* Only in `actual`: NA
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64