Last updated on 2025-05-11 06:50:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.5 | 4.09 | 41.55 | 45.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.5 | 3.80 | 32.38 | 36.18 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.5 | 76.97 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.5 | 89.88 | OK | |||
| r-devel-windows-x86_64 | 0.2.5 | 9.00 | 64.00 | 73.00 | OK | |
| r-patched-linux-x86_64 | 0.2.5 | 4.36 | 133.53 | 137.89 | OK | |
| r-release-linux-x86_64 | 0.2.4 | 3.95 | 129.44 | 133.39 | OK | |
| r-release-macos-arm64 | 0.2.5 | 111.00 | ERROR | |||
| r-release-macos-x86_64 | 0.2.5 | 153.00 | ERROR | |||
| r-release-windows-x86_64 | 0.2.5 | 11.00 | 219.00 | 230.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.5 | 114.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.5 | 243.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.4 | 8.00 | 251.00 | 259.00 | OK |
Version: 0.2.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [65s/81s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dockerfiler)
>
> test_check("dockerfiler")
i Please wait while we compute system requirements...
✔ Updated metadata database: 5.90 MB in 15 files.
ℹ Updating metadata database
✔ Updating metadata database ... done
v Done
renv version = 0.0.0
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = 1.0.3
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = the must up to date in the repos
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = banana
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = 1.0.3
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = the must up to date in the repos
i Please wait while we compute system requirements...
Fetching system dependencies for 55 package(s) records.
i No sysreqs required
v Done
renv version = banana
i Please wait while we compute system requirements...
Fetching system dependencies for 55 package(s) records.
i No sysreqs required
v Done
renv version = 1.0.0
i Please wait while we compute system requirements...
Fetching system dependencies for 55 package(s) records.
i No sysreqs required
v Done
renv version = 0.16.0
i Please wait while we compute system requirements...
Fetching system dependencies for 1 package(s) records.
i No sysreqs required
v Done
[ FAIL 2 | WARN 1 | SKIP 2 | PASS 77 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-dockerbuild.R:24:7', 'test-get_sysreqs.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dock_from_desc.R:105:7'): dock_from_desc works ───────────────
grepl("apt-get update && apt-get install", tpf) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-dock_from_renv.R:112:3'): dock_from_renv works with full dependencies ──
any(grepl("python3", out$Dockerfile)) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 1 | SKIP 2 | PASS 77 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 0.2.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [74s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dockerfiler)
>
> test_check("dockerfiler")
i Please wait while we compute system requirements...
✔ Updated metadata database: 5.90 MB in 15 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
renv version = 0.0.0
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
✔ Updated metadata database: 2.09 MB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 2.02 MB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 2.99 MB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 1.39 MB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 2.88 MB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 106.97 kB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 200.81 kB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
✔ Updated metadata database: 48.72 kB in 14 files.
ℹ Updating metadata database
✖ Updating metadata database ... failed
i No sysreqs required
v Done
renv version = 1.0.3
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = the must up to date in the repos
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = banana
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = 1.0.3
i Please wait while we compute system requirements...
Fetching system dependencies for 54 package(s) records.
i No sysreqs required
v Done
renv version = the must up to date in the repos
i Please wait while we compute system requirements...
Fetching system dependencies for 55 package(s) records.
i No sysreqs required
v Done
renv version = banana
i Please wait while we compute system requirements...
Fetching system dependencies for 55 package(s) records.
i No sysreqs required
v Done
renv version = 1.0.0
i Please wait while we compute system requirements...
Fetching system dependencies for 55 package(s) records.
i No sysreqs required
v Done
[ FAIL 7 | WARN 1 | SKIP 1 | PASS 57 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-get_sysreqs.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-dock_from_desc.R:43:7'): dock_from_desc works ──────────────────
<callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
Error: ! error in pak subprocess
Caused by error:
! Could not solve package dependencies:
* R6: ! pkgdepends resolution error for R6.
Caused by error:
! error writing to connection
* askpass: ! pkgdepends resolution error for askpass.
Caused by error:
! error writing to connection
* attempt: ! pkgdepends resolution error for attempt.
Caused by error:
! error writing to connection
* callr: ! pkgdepends resolution error for callr.
Caused by error:
! error writing to connection
* cli: ! pkgdepends resolution error for cli.
Caused by error:
! error writing to connection
* clipr: ! pkgdepends resolution error for clipr.
Caused by error:
! error writing to connection
* covr: ! pkgdepends resolution error for covr.
Caused by error:
! error writing to connection
* crayon: ! pkgdepends resolution error for crayon.
Caused by error:
! error writing to connection
* credentials: ! pkgdepends resolution error for credentials.
Caused by error:
! error writing to connection
* curl: ! pkgdepends resolution error for curl.
Caused by error:
! error writing to connection
* desc: ! pkgdepends resolution error for desc.
Caused by error:
! error writing to connection
* digest: ! pkgdepends resolution error for digest.
Caused by error:
! error writing to connection
* fs: ! pkgdepends resolution error for fs.
Caused by error:
! error writing to connection
* gert: ! pkgdepends resolution error for gert.
Caused by error:
! error writing to connection
* gh: ! pkgdepends resolution error for gh.
Caused by error:
! error writing to connection
* gitcreds: ! pkgdepends resolution error for gitcreds.
Caused by error:
! error writing to connection
* glue: ! pkgdepends resolution error for glue.
Caused by error:
! error writing to connection
* httr: ! pkgdepends resolution error for httr.
Caused by error:
! error writing to connection
* httr2: ! pkgdepends resolution error for httr2.
Caused by error:
! error writing to connection
* ini: ! pkgdepends resolution error for ini.
Caused by error:
! error writing to connection
* jsonlite: ! pkgdepends resolution error for jsonlite.
Caused by error:
! error writing to connection
* lazyeval: ! pkgdepends resolution error for lazyeval.
Caused by error:
! error writing to connection
* lifecycle: ! pkgdepends resolution error for lifecycle.
Caused by error:
! error writing to connection
* magrittr: ! pkgdepends resolution error for magrittr.
Caused by error:
! error writing to connection
* mime: ! pkgdepends resolution error for mime.
Caused by error:
! error writing to connection
* openssl: ! pkgdepends resolution error for openssl.
Caused by error:
! error writing to connection
* pkgbuild: ! pkgdepends resolution error for pkgbuild.
Caused by error:
! error writing to connection
* processx: ! pkgdepends resolution error for processx.
Caused by error:
! error writing to connection
* ps: ! pkgdepends resolution error for ps.
Caused by error:
! error writing to connection
* purrr: ! pkgdepends resolution error for purrr.
Caused by error:
! error writing to connection
* rappdirs: ! pkgdepends resolution error for rappdirs.
Caused by error:
! error writing to connection
* remotes: ! pkgdepends resolution error for remotes.
Caused by error:
! error writing to connection
* rex: ! pkgdepends resolution error for rex.
Caused by error:
! error writing to connection
* rlang: ! pkgdepends resolution error for rlang.
Caused by error:
! error writing to connection
* rprojroot: ! pkgdepends resolution error for rprojroot.
Caused by error:
! error writing to connection
* rstudioapi: ! pkgdepends resolution error for rstudioapi.
Caused by error:
! error writing to connection
* sys: ! pkgdepends resolution error for sys.
Caused by error:
! error writing to connection
* usethis: ! pkgdepends resolution error for usethis.
Caused by error:
! error writing to connection
* vctrs: ! pkgdepends resolution error for vctrs.
Caused by error:
! error writing to connection
* whisker: ! pkgdepends resolution error for whisker.
Caused by error:
! error writing to connection
* withr: ! pkgdepends resolution error for withr.
Caused by error:
! error writing to connection
* yaml: ! pkgdepends resolution error for yaml.
Caused by error:
! error writing to connection
* zip: ! pkgdepends resolution error for zip.
Caused by error:
! error writing to connection
Backtrace:
▆
1. └─dockerfiler::dock_from_desc(file.path(".", "DESCRIPTION__")) at test-dock_from_desc.R:43:7
2. ├─base::unique(get_sysreqs(packages = packages))
3. └─dockerfiler::get_sysreqs(packages = packages)
4. └─pak::pkg_sysreqs(pkg = all_deps, sysreqs_platform = "debian")
5. └─pak:::remote(...)
6. └─err$throw(res$error)
── Failure ('test-dock_from_renv.R:83:3'): dock_from_renv works ────────────────
`dock_created` (`actual`) not equal to `dock_expected` (`expected`).
actual vs expected
+ "FROM rocker/verse:4.1.2"
+ "RUN fake sys reqs"
+ "RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/"
+ "RUN echo \"options(renv.config.pak.enabled = FALSE, repos = fake repos, download.file.method = 'libcurl', Ncpus = 4)\" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site"
+ "RUN R -e 'install.packages(\"remotes\")'"
+ "RUN R -e 'remotes::install_version(\"renv\", version = \"0.0.0\")'"
+ "COPY renv.lock renv.lock"
+ "RUN --mount=type=cache,id=renv-cache,target=/root/.cache/R/renv R -e 'renv::restore()'"
── Failure ('test-dock_from_renv.R:112:3'): dock_from_renv works with full dependencies ──
any(grepl("python3", out$Dockerfile)) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Error ('test-dockerbuild.R:11:7'): dockerfile is buildable ──────────────────
Error in `(function (err)
{
stop("Failed to parse 'renv.lock':\n", conditionMessage(err))
})(structure(list(message = "parse error: premature EOF\n \n (right here) ------^\n",
call = NULL, traceback = c("Traceback (most recent calls last):",
"53: test_check(\"dockerfiler\")", "52: test_dir(\"testthat\", package = package, reporter = reporter, ",
" ..., load_package = \"installed\")", "51: test_files(test_dir = path, test_paths = test_paths, test_package = package, ",
" reporter = reporter, load_helpers = load_helpers, env = env, ",
" stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, ",
" load_package = load_package, parallel = parallel)",
"50: test_files_serial(test_dir = test_dir, test_package = test_package, ",
" test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, ",
" env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, ",
" desc = desc, load_package = load_package, error_call = error_call)",
"49: with_reporter(reporters$multi, lapply(test_paths, test_one_file, ",
" env = env, desc = desc, error_call = error_call))",
"48: tryCatch(code, testthat_abort_reporter = function(cnd) {",
" cat(conditionMessage(cnd), \"\\n\")", " NULL",
" })", "47: tryCatchList(expr, classes, parentenv, handlers)",
"46: tryCatchOne(expr, names, parentenv, handlers[[1L]])",
"45: doTryCatch(return(expr), name, parentenv, handler)",
"44: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)",
"43: FUN(X[[i]], ...)", "42: source_file(path, env = env(env), desc = desc, error_call = error_call)",
"41: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||% ",
" StopReporter$new())", "40: tryCatch(withCallingHandlers({",
" eval(code, test_env)", " if (!handled && !is.null(test)) {",
" skip_empty()", " }", " }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, ",
" message = handle_message, error = handle_error), error = handle_fatal, ",
" skip = function(e) {", " })", "39: tryCatchList(expr, classes, parentenv, handlers)",
"38: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), ",
" names[nh], parentenv, handlers[[nh]])", "37: doTryCatch(return(expr), name, parentenv, handler)",
"36: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])",
"35: tryCatchOne(expr, names, parentenv, handlers[[1L]])",
"34: doTryCatch(return(expr), name, parentenv, handler)",
"33: withCallingHandlers({", " eval(code, test_env)",
" if (!handled && !is.null(test)) {", " skip_empty()",
" }", " }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, ",
" message = handle_message, error = handle_error)",
"32: eval(code, test_env)", "31: eval(code, test_env)", "30: withr::with_dir(n_temp, {",
" test_that(\"dockerfile is buildable\", ...)", " }) at test-dockerbuild.R#4",
"29: force(code)", "28: test_that(\"dockerfile is buildable\", ...) at test-dockerbuild.R#7",
"27: test_code(desc, code, env = parent.frame(), reporter = reporter)",
"26: tryCatch(withCallingHandlers({", " eval(code, test_env)",
" if (!handled && !is.null(test)) {", " skip_empty()",
" }", " }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, ",
" message = handle_message, error = handle_error), error = handle_fatal, ",
" skip = function(e) {", " })", "25: tryCatchList(expr, classes, parentenv, handlers)",
"24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), ",
" names[nh], parentenv, handlers[[nh]])", "23: doTryCatch(return(expr), name, parentenv, handler)",
"22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])",
"21: tryCatchOne(expr, names, parentenv, handlers[[1L]])",
"20: doTryCatch(return(expr), name, parentenv, handler)",
"19: withCallingHandlers({", " eval(code, test_env)",
" if (!handled && !is.null(test)) {", " skip_empty()",
" }", " }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, ",
" message = handle_message, error = handle_error)",
"18: eval(code, test_env)", "17: eval(code, test_env)", "16: my_dock <- dock_from_renv(lockfile = \"renv.lock\") at test-dockerbuild.R#11",
"15: dockerfiler::renv$lockfile_read(file = lockfile)", "14: renv_lockfile_read(file = file)",
"13: withCallingHandlers(json <- renv_json_read(text = contents), ",
" error = function(err) {", " stop(\"Failed to parse 'renv.lock':\\n\", conditionMessage(err))",
" })", "12: renv_json_read(text = contents)", "11: catch(renv_json_read_jsonlite(file, text))",
"10: tryCatch(withCallingHandlers(expr, error = renv_error_capture), ",
" error = renv_error_tag)", " 9: tryCatchList(expr, classes, parentenv, handlers)",
" 8: tryCatchOne(expr, names, parentenv, handlers[[1L]])",
" 7: doTryCatch(return(expr), name, parentenv, handler)",
" 6: withCallingHandlers(expr, error = renv_error_capture)",
" 5: renv_json_read_jsonlite(file, text)", " 4: jsonlite::fromJSON(txt = text, simplifyVector = FALSE)",
" 3: parse_and_simplify(txt = txt, simplifyVector = simplifyVector, ",
" simplifyDataFrame = simplifyDataFrame, simplifyMatrix = simplifyMatrix, ",
" flatten = flatten, ...)", " 2: parseJSON(txt, bigint_as_char)",
" 1: parse_string(txt, bigint_as_char)")), class = c("simpleError",
"error", "condition")))`: Failed to parse 'renv.lock':
parse error: premature EOF
(right here) ------^
Backtrace:
▆
1. ├─dockerfiler::dock_from_renv(lockfile = "renv.lock") at test-dockerbuild.R:11:7
2. │ └─dockerfiler::renv$lockfile_read(file = lockfile)
3. │ └─dockerfiler (local) renv_lockfile_read(file = file)
4. │ ├─base::withCallingHandlers(...)
5. │ └─dockerfiler (local) renv_json_read(text = contents)
6. │ └─base::stop(jlerr)
7. └─dockerfiler (local) `<fn>`(`<smplErrr>`)
── Failure ('test-utils.R:5:3'): utils works ───────────────────────────────────
grepl("test", res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-utils.R:14:3'): utils works ──────────────────────────────────
grepl("test", res) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-utils.R:23:3'): utils works ──────────────────────────────────
grepl("test", res) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 7 | WARN 1 | SKIP 1 | PASS 57 ]
Error: Test failures
Execution halted
Warning message:
In close.connection(con) :
Problem closing connection: No space left on device
Flavor: r-release-macos-x86_64