CRAN Package Check Results for Maintainer ‘Alexander Sibley <dcibioinformatics at duke.edu>’

Last updated on 2024-12-23 12:49:40 CET.

Package WARN NOTE OK
fastJT 1 12
groupedSurv 1 3 9
snplist 1 3 9
survSNP 1 12

Package fastJT

Current CRAN status: WARN: 1, NOTE: 12

Version: 1.0.6
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: fastJT-package.Rd: Rcpp Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘fastJT.Rnw’ using knitr Error: processing vignette 'fastJT.Rnw' failed with diagnostics: Running 'texi2dvi' on 'fastJT.tex' failed. LaTeX errors: ! Undefined control sequence. l.5 \hldef {res} \hlkwb{<-} \hlkwd{fastJT}\hldef{(Y, X,} \hlkwc{outTopN}\hlde... ? ! Emergency stop. l.5 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘fastJT.Rnw’ SUMMARY: processing the following file failed: ‘fastJT.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package groupedSurv

Current CRAN status: WARN: 1, NOTE: 3, OK: 9

Version: 1.0.5.1
Check: installed package size
Result: NOTE installed size is 9.7Mb sub-directories of 1Mb or more: libs 9.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.5.1
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘groupedSurv.Rnw’ using knitr Error: processing vignette 'groupedSurv.Rnw' failed with diagnostics: Running 'texi2dvi' on 'groupedSurv.tex' failed. LaTeX errors: ! Undefined control sequence. l.7 \hlkwd{thetaEst}\hldef {(}\hlkwc{Z}\hldef{=}\hlkwa{NULL}\hldef{, gtime, d... ? ! Emergency stop. l.7 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘groupedSurv.Rnw’ SUMMARY: processing the following file failed: ‘groupedSurv.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package snplist

Current CRAN status: WARN: 1, NOTE: 3, OK: 9

Version: 0.18.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: snplist-package.Rd: Rcpp Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.18.2
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘snplist.Rnw’ using knitr Error: processing vignette 'snplist.Rnw' failed with diagnostics: Running 'texi2dvi' on 'snplist.tex' failed. LaTeX errors: ! Undefined control sequence. l.8 \hldef {genes} \hlkwb{<-} \hlkwd{c}\hldef{(}\hlsng{"BRCA1"}\hldef{,}\hlsn... ? ! Emergency stop. l.8 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘snplist.Rnw’ SUMMARY: processing the following file failed: ‘snplist.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package survSNP

Current CRAN status: WARN: 1, OK: 12

Version: 0.26
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘survSNP.Rnw’ using knitr Error: processing vignette 'survSNP.Rnw' failed with diagnostics: Running 'texi2dvi' on 'survSNP.tex' failed. LaTeX errors: ! Undefined control sequence. l.76 \hlkwd{library}\hldef {(survSNP)} ? ! Emergency stop. ! Emergency stop. l.76 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘survSNP.Rnw’ SUMMARY: processing the following file failed: ‘survSNP.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64