Last updated on 2026-11-08 22:56:04 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 3.30 | 44.67 | 47.97 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 2.36 | 32.71 | 35.07 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | OK | ||||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 37.82 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 8.00 | 75.00 | 83.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | OK | ||||
| r-release-linux-x86_64 | 0.1.3 | 2.90 | 39.46 | 42.36 | OK | |
| r-release-macos-arm64 | 0.1.3 | 1.00 | 18.00 | 19.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 2.00 | 62.00 | 64.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 7.00 | 74.00 | 81.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | 1.00 | 16.00 | 17.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.3 | 2.00 | 60.00 | 62.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 8.00 | 77.00 | 85.00 | OK |
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(clinTrialData)
>
> test_check("clinTrialData")
i Replace some metadata informations...
--------------------------------------------------------------------------------
Connection to:
> adam
* connector_fs
* /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/clinTrialData/exampledata/cdisc_pilot/adam
--------------------------------------------------------------------------------
Connection to:
> sdtm
* connector_fs
* /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/clinTrialData/exampledata/cdisc_pilot/sdtm
i Replace some metadata informations...
--------------------------------------------------------------------------------
Connection to:
> adam
* connector_fs
* /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/clinTrialData/exampledata/cdisc_pilot/adam
--------------------------------------------------------------------------------
Connection to:
> sdtm
* connector_fs
* /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/clinTrialData/exampledata/cdisc_pilot/sdtm
Saving _problems/test-lock-19.R
Saving _problems/test-lock-28.R
Saving _problems/test-lock-45.R
Saving _problems/test-lock-59.R
Saving _problems/test-lock-89.R
Saving _problems/test-lock-110.R
Saving _problems/test-lock-144.R
Saving _problems/test-lock-174.R
Saving _problems/test-lock-203.R
Saving _problems/test-lock-230.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 127 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-lock.R:19:3'): lock_study locks and is_study_locked detects it ──
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:19:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:28:3'): unlock_study removes the lock ───────────────────
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:28:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:45:3'): locking the same path twice is idempotent ───────
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:45:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:59:3'): get_lock_status reports correct state ───────────
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:59:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:89:3'): can_write_study returns TRUE when unlocked, FALSE when locked ──
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:89:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:110:3'): write_cnt on a locked connector errors ─────────
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:110:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:144:3'): remove_cnt on a locked connector errors ────────
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:144:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:174:3'): write_cnt succeeds on an unlocked connector ────
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:174:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:203:3'): remove_cnt succeeds on an unlocked connector ───
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:203:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
── Error ('test-lock.R:230:3'): lock then unlock then write succeeds end-to-end ──
Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. └─clinTrialData (local) make_fake_study() at test-lock.R:230:3
2. └─arrow::write_parquet(data.frame(x = 1:3), file.path(domain, "dummy.parquet")) at test-lock.R:8:5
3. ├─ParquetFileWriter$create(...)
4. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
5. └─ParquetWriterProperties$create(...)
6. └─arrow:::parquet___WriterProperties___Builder__create()
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 127 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘getting-started.Rmd’ using rmarkdown
Quitting from getting-started.Rmd:63-73 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `parquet___arrow___ArrowReaderProperties__Make()`:
! Cannot call parquet___arrow___ArrowReaderProperties__Make(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
---
Backtrace:
▆
1. └─db$adam$read_cnt("adsl")
2. ├─connector::read_cnt(self, name, ...)
3. └─connector:::read_cnt.ConnectorFS(self, name, ...)
4. └─connector::read_file(...)
5. ├─connector::read_ext(path, ...)
6. └─connector:::read_ext.parquet(path, ...)
7. └─arrow::read_parquet(file = path, ...)
8. ├─ParquetFileReader$create(file, props = props, mmap = mmap, ...)
9. │ └─arrow:::assert_is(props, "ParquetArrowReaderProperties")
10. │ ├─assertthat::assert_that(inherits(object, class), msg = msg)
11. │ │ └─assertthat::see_if(..., env = env, msg = msg)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::eval(assertion, env)
17. │ │ └─base::eval(assertion, env)
18. │ └─base::inherits(object, class)
19. └─ParquetArrowReaderProperties$create()
20. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
Cannot call parquet___arrow___ArrowReaderProperties__Make(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
--- failed re-building ‘getting-started.Rmd’
SUMMARY: processing the following file failed:
‘getting-started.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc