Last updated on 2025-08-01 21:49:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.6.3 | 7.77 | 64.07 | 71.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.6.3 | 5.43 | 45.22 | 50.65 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.6.3 | 111.03 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.6.3 | 133.44 | OK | |||
| r-devel-windows-x86_64 | 2.6.3 | 9.00 | 79.00 | 88.00 | OK | |
| r-patched-linux-x86_64 | 2.6.3 | 6.57 | 59.51 | 66.08 | OK | |
| r-release-linux-x86_64 | 2.6.2 | 5.92 | 51.25 | 57.17 | ERROR | |
| r-release-macos-arm64 | 2.6.3 | 39.00 | OK | |||
| r-release-macos-x86_64 | 2.6.3 | 74.00 | OK | |||
| r-release-windows-x86_64 | 2.6.3 | 9.00 | 76.00 | 85.00 | OK | |
| r-oldrel-macos-arm64 | 2.6.3 | 41.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.6.3 | 75.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.6.3 | 10.00 | 94.00 | 104.00 | OK |
Version: 2.6.2
Check: examples
Result: ERROR
Running examples in ‘clam-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.dates
> ### Title: Add dates to age-depth plots
> ### Aliases: add.dates
>
> ### ** Examples
>
> base_temp_dir <- tempdir()
> clam_dir <- file.path(base_temp_dir, "clam_runs")
> dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE)
> clam(, coredir=clam_dir, ask=FALSE)
The run's files will be put in this folder: /home/hornik/tmp/scratch/RtmpZXTYav/clam_runs/Example
Warning, some dates lie partly outside the calibration curve!
Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) :
undefined columns selected
Calls: clam -> .read.clam -> [ -> [.data.frame
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘clam.Rmd’ using rmarkdown
Quitting from clam.Rmd:30-36 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─clam::clam(, ask = FALSE, coredir = clam_dir)
2. └─clam:::.read.clam(...)
3. ├─dat$hpd[[i]][2 * nrow(dat$hpd[[i]])]
4. └─base::`[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]]))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clam.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘clam.Rmd’
SUMMARY: processing the following file failed:
‘clam.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64