Last updated on 2024-04-20 05:59:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.9 | 10.96 | 290.52 | 301.48 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.9 | 10.87 | 202.86 | 213.73 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.9 | 469.66 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.9 | 436.30 | NOTE | |||
| r-prerel-macos-arm64 | 1.0.9 | 114.00 | NOTE | |||
| r-prerel-windows-x86_64 | 1.0.9 | 12.00 | 235.00 | 247.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.9 | 9.36 | 315.17 | 324.53 | NOTE | |
| r-release-linux-x86_64 | 1.0.9 | 9.66 | 311.25 | 320.91 | OK | |
| r-release-macos-arm64 | 1.0.9 | 113.00 | OK | |||
| r-release-macos-x86_64 | 1.0.9 | 294.00 | OK | |||
| r-release-windows-x86_64 | 1.0.9 | 17.00 | 290.00 | 307.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.9 | 109.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.9 | 18.00 | 286.00 | 304.00 | OK |
Version: 1.0.9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘SingleCellExperiment’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.9
Check: Rd files
Result: NOTE
checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces
19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.}
| ^
checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup?
18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.}
| ^
checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup?
30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-patched-linux-x86_64
Version: 1.0.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘anndata.Rmd’ using rmarkdown
--- finished re-building ‘anndata.Rmd’
--- re-building ‘ginhoux.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/show_dimred-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19199 bytes
Input file size = 19301 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14187
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14187
Output IDAT size = 14187 bytes (5012 bytes decrease)
Output file size = 14265 bytes (5036 bytes = 26.09% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/plot_trajectory-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20139 bytes
Input file size = 20241 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15180
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15180
Output IDAT size = 15180 bytes (4959 bytes decrease)
Output file size = 15258 bytes (4983 bytes = 24.62% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/visualise_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15021 bytes
Input file size = 15111 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11452
Output IDAT size = 11452 bytes (3569 bytes decrease)
Output file size = 11530 bytes (3581 bytes = 23.70% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/moduled_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15692 bytes
Input file size = 15782 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11492
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11492
Output IDAT size = 11492 bytes (4200 bytes decrease)
Output file size = 11570 bytes (4212 bytes = 26.69% decrease)
--- finished re-building ‘ginhoux.Rmd’
--- re-building ‘simulated-data.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/show_dimred-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18081 bytes
Input file size = 18183 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13317
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13317
Output IDAT size = 13317 bytes (4764 bytes decrease)
Output file size = 13395 bytes (4788 bytes = 26.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/plot_trajectory-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19472 bytes
Input file size = 19574 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14652
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14652
Output IDAT size = 14652 bytes (4820 bytes decrease)
Output file size = 14730 bytes (4844 bytes = 24.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/visualise_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16253 bytes
Input file size = 16343 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11827
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11827
Output IDAT size = 11827 bytes (4426 bytes decrease)
Output file size = 11905 bytes (4438 bytes = 27.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/moduled_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17734 bytes
Input file size = 17836 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12733
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12733
Output IDAT size = 12733 bytes (5001 bytes decrease)
Output file size = 12811 bytes (5025 bytes = 28.17% decrease)
--- finished re-building ‘simulated-data.Rmd’
--- re-building ‘singlecellexperiment.Rmd’ using rmarkdown
Quitting from lines at lines 26-40 [load_data] (singlecellexperiment.Rmd)
Error: processing vignette 'singlecellexperiment.Rmd' failed with diagnostics:
there is no package called 'SingleCellExperiment'
--- failed re-building ‘singlecellexperiment.Rmd’
SUMMARY: processing the following file failed:
‘singlecellexperiment.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘anndata.Rmd’ using rmarkdown
--- finished re-building ‘anndata.Rmd’
--- re-building ‘ginhoux.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/show_dimred-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19199 bytes
Input file size = 19301 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14187
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14187
Output IDAT size = 14187 bytes (5012 bytes decrease)
Output file size = 14265 bytes (5036 bytes = 26.09% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/plot_trajectory-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20139 bytes
Input file size = 20241 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15180
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15180
Output IDAT size = 15180 bytes (4959 bytes decrease)
Output file size = 15258 bytes (4983 bytes = 24.62% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/visualise_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15021 bytes
Input file size = 15111 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11452
Output IDAT size = 11452 bytes (3569 bytes decrease)
Output file size = 11530 bytes (3581 bytes = 23.70% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/moduled_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15692 bytes
Input file size = 15782 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11492
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11492
Output IDAT size = 11492 bytes (4200 bytes decrease)
Output file size = 11570 bytes (4212 bytes = 26.69% decrease)
--- finished re-building ‘ginhoux.Rmd’
--- re-building ‘simulated-data.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/show_dimred-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18081 bytes
Input file size = 18183 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13317
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13317
Output IDAT size = 13317 bytes (4764 bytes decrease)
Output file size = 13395 bytes (4788 bytes = 26.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/plot_trajectory-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19472 bytes
Input file size = 19574 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14652
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14652
Output IDAT size = 14652 bytes (4820 bytes decrease)
Output file size = 14730 bytes (4844 bytes = 24.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/visualise_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16253 bytes
Input file size = 16343 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11827
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11827
Output IDAT size = 11827 bytes (4426 bytes decrease)
Output file size = 11905 bytes (4438 bytes = 27.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/moduled_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17734 bytes
Input file size = 17836 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12733
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12733
Output IDAT size = 12733 bytes (5001 bytes decrease)
Output file size = 12811 bytes (5025 bytes = 28.17% decrease)
--- finished re-building ‘simulated-data.Rmd’
--- re-building ‘singlecellexperiment.Rmd’ using rmarkdown
Quitting from lines at lines 26-40 [load_data] (singlecellexperiment.Rmd)
Error: processing vignette 'singlecellexperiment.Rmd' failed with diagnostics:
there is no package called 'SingleCellExperiment'
--- failed re-building ‘singlecellexperiment.Rmd’
SUMMARY: processing the following file failed:
‘singlecellexperiment.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc