Last updated on 2025-02-01 12:48:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.6 | 43.59 | 230.14 | 273.73 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.6 | 27.37 | 150.00 | 177.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.6 | 471.69 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.6 | 432.44 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.6 | 44.00 | 198.00 | 242.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.6 | 40.53 | 211.81 | 252.34 | ERROR | |
| r-release-linux-x86_64 | 1.0.6 | 39.13 | 212.43 | 251.56 | ERROR | |
| r-release-macos-arm64 | 1.0.6 | 77.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.6 | 137.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.6 | 43.00 | 196.00 | 239.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.5 | 110.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.5 | 186.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.6 | 58.00 | 274.00 | 332.00 | ERROR |
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘RISCA-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: markov.3states.rsadd
> ### Title: 3-state Relative Survival Markov Model with Additive Risks
> ### Aliases: markov.3states.rsadd
> ### Keywords: Markov
>
> ### ** Examples
>
> # import the observed data
> # (X=1 corresponds to initial state with a functioning graft, X=2 to acute rejection episode,
> # X=3 to return to dialysis, X=4 to death with a functioning graft)
>
> data(dataDIVAT1)
>
> # A subgroup analysis to reduce the time needed for this example
>
> dataDIVAT1$id<-c(1:nrow(dataDIVAT1))
> set.seed(2)
> d3<-dataDIVAT1[dataDIVAT1$id %in% sample(dataDIVAT1$id, 200, replace = FALSE),]
>
> # Individuals with trajectory 13 and 123 are
> # censored at the time of transition into state X=3
>
> d3$trajectory[d3$trajectory==13]<-1
> d3$trajectory[d3$trajectory==123]<-12
> d3$trajectory[d3$trajectory==14]<-13
> d3$trajectory[d3$trajectory==124]<-123
>
> # import the expected mortality rates
>
> data(fr.ratetable)
>
> # 3-state Markov model with additive risks including one explicative variable
> # (z is the delayed graft function) on all transitions. We only reduced
> # the precision and the number of iteration to save time in this example,
> # prefer the default values.
>
> markov.3states.rsadd(times1=d3$time1, times2=d3$time2, sequences=d3$trajectory,
+ dist=c("E","E","E"), ini.dist.12=c(8.34),
+ ini.dist.13=c(10.70), ini.dist.23=c(11.10),
+ cov.12=d3$z, init.cov.12=c(0.04), names.12=c("beta12_z"),
+ cov.13=d3$z, init.cov.13=c(1.04), names.13=c("beta1E_z"),
+ cov.23=d3$z, init.cov.23=c(0.29), names.23=c("beta2E_z"),
+ p.age=d3$ageR*365.24, p.sex=d3$sexR,
+ p.year=as.date(paste("01","01",d3$year.tx), order = "mdy"),
+ p.rate.table=fr.ratetable, conf.int=TRUE,
+ silent=FALSE, precision=0.001)
Error in as.date(paste("01", "01", d3$year.tx), order = "mdy") :
could not find function "as.date"
Calls: markov.3states.rsadd
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘RISCA-Ex.R’ failed
The error most likely occurred in:
> ### Name: markov.3states.rsadd
> ### Title: 3-state Relative Survival Markov Model with Additive Risks
> ### Aliases: markov.3states.rsadd
> ### Keywords: Markov
>
> ### ** Examples
>
> # import the observed data
> # (X=1 corresponds to initial state with a functioning graft, X=2 to acute rejection episode,
> # X=3 to return to dialysis, X=4 to death with a functioning graft)
>
> data(dataDIVAT1)
>
> # A subgroup analysis to reduce the time needed for this example
>
> dataDIVAT1$id<-c(1:nrow(dataDIVAT1))
> set.seed(2)
> d3<-dataDIVAT1[dataDIVAT1$id %in% sample(dataDIVAT1$id, 200, replace = FALSE),]
>
> # Individuals with trajectory 13 and 123 are
> # censored at the time of transition into state X=3
>
> d3$trajectory[d3$trajectory==13]<-1
> d3$trajectory[d3$trajectory==123]<-12
> d3$trajectory[d3$trajectory==14]<-13
> d3$trajectory[d3$trajectory==124]<-123
>
> # import the expected mortality rates
>
> data(fr.ratetable)
>
> # 3-state Markov model with additive risks including one explicative variable
> # (z is the delayed graft function) on all transitions. We only reduced
> # the precision and the number of iteration to save time in this example,
> # prefer the default values.
>
> markov.3states.rsadd(times1=d3$time1, times2=d3$time2, sequences=d3$trajectory,
+ dist=c("E","E","E"), ini.dist.12=c(8.34),
+ ini.dist.13=c(10.70), ini.dist.23=c(11.10),
+ cov.12=d3$z, init.cov.12=c(0.04), names.12=c("beta12_z"),
+ cov.13=d3$z, init.cov.13=c(1.04), names.13=c("beta1E_z"),
+ cov.23=d3$z, init.cov.23=c(0.29), names.23=c("beta2E_z"),
+ p.age=d3$ageR*365.24, p.sex=d3$sexR,
+ p.year=as.date(paste("01","01",d3$year.tx), order = "mdy"),
+ p.rate.table=fr.ratetable, conf.int=TRUE,
+ silent=FALSE, precision=0.001)
Error in as.date(paste("01", "01", d3$year.tx), order = "mdy") :
could not find function "as.date"
Calls: markov.3states.rsadd
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64