Last updated on 2024-12-23 12:49:19 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.5 | 17.73 | 143.88 | 161.61 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4.5 | 11.43 | 103.01 | 114.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.5 | 269.38 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.5 | 257.04 | OK | |||
| r-devel-windows-x86_64 | 1.4.5 | 18.00 | 150.00 | 168.00 | OK | |
| r-patched-linux-x86_64 | 1.4.5 | 14.42 | 143.40 | 157.82 | OK | |
| r-release-linux-x86_64 | 1.4.5 | 14.37 | 141.92 | 156.29 | OK | |
| r-release-macos-arm64 | 1.4.5 | 75.00 | OK | |||
| r-release-macos-x86_64 | 1.4.5 | 129.00 | OK | |||
| r-release-windows-x86_64 | 1.4.5 | 18.00 | 156.00 | 174.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.5 | 87.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.4.5 | 161.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.4.5 | 24.00 | 192.00 | 216.00 | OK |
Version: 1.4.5
Check: examples
Result: ERROR
Running examples in ‘MetabolomicsBasics-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ReplaceMissingValues
> ### Title: ReplaceMissingValues.
> ### Aliases: ReplaceMissingValues
>
> ### ** Examples
>
> # load raw data and sample description
> raw <- MetabolomicsBasics::raw
> sam <- MetabolomicsBasics::sam
>
> idx <- apply(raw, 2, CheckForOutliers, group = sam$GT, n_sd = 5, method = "logical")
> sum(idx) # 215 values would be classified as outlier using a five-sigma band
[1] 215
> old_vals <- raw[idx] # keep outlier values for comparison
> raw_filt <- raw
> raw_filt[idx] <- NA
> raw_means <- apply(raw, 2, function(x) {
+ sapply(split(x, sam$GT), mean, na.rm = TRUE)[as.numeric(sam$GT)]
+ })[idx]
> raw_repl <- ReplaceMissingValues(x = raw_filt)
Error in verify_suggested("mixOmics") :
The use of this function requires packagemixOmics. Please install.
Calls: ReplaceMissingValues -> verify_suggested
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
CheckForOutliers 3.846 0.048 5.572
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4.5
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'ropls', 'xcms'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64