Last updated on 2022-06-29 06:53:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 24.24 | 207.76 | 232.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 16.63 | 152.87 | 169.50 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.5 | 291.57 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 275.21 | OK | |||
| r-devel-windows-x86_64 | 1.0.5 | 61.00 | 243.00 | 304.00 | OK | |
| r-patched-linux-x86_64 | 1.0.5 | 19.56 | 197.32 | 216.88 | OK | |
| r-release-linux-x86_64 | 1.0.5 | 19.84 | 194.10 | 213.94 | OK | |
| r-release-macos-arm64 | 1.0.5 | 57.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.5 | 101.00 | OK | |||
| r-release-windows-x86_64 | 1.0.5 | 34.00 | 225.00 | 259.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.5 | 64.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.5 | 101.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.5 | 46.00 | 229.00 | 275.00 | OK |
Version: 1.0.5
Check: examples
Result: ERROR
Running examples in ‘LongDat-Ex.R’ failed
The error most likely occurred in:
> ### Name: cuneiform_plot
> ### Title: Create cuneiform plots of result table from longdat_disc() or
> ### longdat_cont()
> ### Aliases: cuneiform_plot
>
> ### ** Examples
>
> test_disc <- longdat_disc(input = LongDat_disc_master_table,
+ data_type = "count", test_var = "Time_point",
+ variable_col = 7, fac_var = c(1:3))
[1] "Start data preprocessing."
[1] "Finish data preprocessing."
[1] "Start selecting potential covariates."
[1] 1
[1] 2
[1] 3
[1] 1
[1] 2
[1] 3
[1] "Finished selecting potential covariates."
[1] "Start null model test and post-hoc test."
[1] 1
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] 2
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] 3
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] "Finish null model test and post-hoc test."
[1] "Start covariate model test."
[1] 1
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] 2
[1] 3
[1] "Finish covariate model test."
[1] "Start unlisting tables from covariate model result."
Using p_lm as value column: use value.var to override.
Using p_lm as value column: use value.var to override.
[1] "Finish unlisting tables from covariate model result."
[1] "Start calculating effect size."
[1] 1
[1] 2
[1] 3
[1] "Finish calculating effect size."
[1] "Start randomized negative control model test."
[1] 1
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] 2
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] 3
ERROR : Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
[1] 1
[1] 2
[1] 3
Error in eval(e, x, parent.frame()) : object 'NB_theta' not found
Calls: longdat_disc ... random_neg_ctrl_disc -> subset -> subset.data.frame -> eval -> eval
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘LongDat_cont_tutorial.Rmd’ using rmarkdown
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
Package version inconsistency detected.
glmmTMB was built with TMB version 1.7.22
Current TMB version is 1.9.0
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.3.6 ✔ purrr 0.3.4
✔ tibble 3.1.7 ✔ dplyr 1.0.9
✔ tidyr 1.2.0 ✔ stringr 1.4.0
✔ readr 2.1.2 ✔ forcats 0.5.1
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Attaching package: 'kableExtra'
The following object is masked from 'package:dplyr':
group_rows
Using p_lm as value column: use value.var to override.
Using p_lm as value column: use value.var to override.
Warning in cor.test.default(subdata[, test_var], subdata$value, method = "spearman") :
Cannot compute exact p-value with ties
Warning in cor.test.default(subdata[, test_var], subdata$value, method = "spearman") :
Cannot compute exact p-value with ties
Warning in cor.test.default(subdata[, test_var], subdata$value, method = "spearman") :
Cannot compute exact p-value with ties
Warning in cor.test.default(subdata_random[, test_var], subdata_random$value, :
Cannot compute exact p-value with ties
Warning in cor.test.default(subdata_random[, test_var], subdata_random$value, :
Cannot compute exact p-value with ties
Warning in cor.test.default(subdata_random[, test_var], subdata_random$value, :
Cannot compute exact p-value with ties
Quitting from lines 109-116 (LongDat_cont_tutorial.Rmd)
Error: processing vignette 'LongDat_cont_tutorial.Rmd' failed with diagnostics:
object 'NB_theta' not found
--- failed re-building ‘LongDat_cont_tutorial.Rmd’
--- re-building ‘LongDat_disc_tutorial.Rmd’ using rmarkdown
Using p_lm as value column: use value.var to override.
Using p_lm as value column: use value.var to override.
Quitting from lines 109-116 (LongDat_disc_tutorial.Rmd)
Error: processing vignette 'LongDat_disc_tutorial.Rmd' failed with diagnostics:
object 'NB_theta' not found
--- failed re-building ‘LongDat_disc_tutorial.Rmd’
SUMMARY: processing the following files failed:
‘LongDat_cont_tutorial.Rmd’ ‘LongDat_disc_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64