Last updated on 2023-04-02 03:51:29 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-13 | 4.72 | 245.36 | 250.08 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-13 | 3.30 | 195.41 | 198.71 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-13 | 322.89 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-13 | 339.39 | OK | |||
| r-devel-windows-x86_64 | 1.0-13 | 10.00 | 96.00 | 106.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.0-13 | 6.66 | 243.70 | 250.36 | OK | |
| r-release-linux-x86_64 | 1.0-13 | 4.34 | 240.59 | 244.93 | OK | |
| r-release-macos-arm64 | 1.0-13 | 348.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0-13 | 231.00 | OK | |||
| r-release-windows-x86_64 | 1.0-13 | 109.00 | 96.00 | 205.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.0-13 | 186.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0-13 | 245.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0-13 | 8.00 | 74.00 | 82.00 | OK | --no-vignettes |
Version: 1.0-13
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: tools
Loading required package: Matrix
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Loading required package: TH.data
Loading required package: MASS
Attaching package: 'TH.data'
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--- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'
--- re-building 'Ch_analysing_longitudinal_dataII.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Loading required package: Matrix
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge with max|grad| = 0.197378 (tol = 0.002, component 1)
--- finished re-building 'Ch_analysing_longitudinal_dataII.Rnw'
--- re-building 'Ch_analysis_of_variance.Rnw' using Sweave
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--- finished re-building 'Ch_analysis_of_variance.Rnw'
--- re-building 'Ch_bayesian_inference.Rnw' using Sweave
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--- finished re-building 'Ch_bayesian_inference.Rnw'
--- re-building 'Ch_cluster_analysis.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Package 'mclust' version 6.0.0
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: 'mvtnorm'
The following object is masked from 'package:mclust':
dmvnorm
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Error: processing vignette 'Ch_cluster_analysis.Rnw' failed with diagnostics:
chunk 5 (label = CA-pottery-distplot)
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--- failed re-building 'Ch_cluster_analysis.Rnw'
--- re-building 'Ch_conditional_inference.Rnw' using Sweave
Loading required package: HSAUR3
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Warning in chisq.test(suicides) :
Chi-squared approximation may be incorrect
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'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_conditional_inference.Rnw'
--- re-building 'Ch_density_estimation.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
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Attaching package: 'boot'
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Package 'mclust' version 6.0.0
Type 'citation("mclust")' for citing this R package in publications.
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--- finished re-building 'Ch_density_estimation.Rnw'
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--- finished re-building 'Ch_errata.Rnw'
--- re-building 'Ch_gam.Rnw' using Sweave
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--- finished re-building 'Ch_gam.Rnw'
--- re-building 'Ch_graphical_display.Rnw' using Sweave
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Checking rgeos availability: TRUE
Please note that 'maptools' will be retired during 2023,
plan transition at your earliest convenience;
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--- re-building 'Ch_introduction_to_R.Rnw' using Sweave
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--- finished re-building 'Ch_introduction_to_R.Rnw'
--- re-building 'Ch_logistic_regression_glm.Rnw' using Sweave
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--- finished re-building 'Ch_meta_analysis.Rnw'
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Attaching package: 'mice'
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toenail
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filter
The following objects are masked from 'package:base':
cbind, rbind
--- finished re-building 'Ch_missing_values.Rnw'
--- re-building 'Ch_multidimensional_scaling.Rnw' using Sweave
Loading required package: HSAUR3
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Loading required package: RColorBrewer
Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
only 7 of the first 13 eigenvalues are > 0
--- finished re-building 'Ch_multidimensional_scaling.Rnw'
--- re-building 'Ch_multiple_linear_regression.Rnw' using Sweave
Loading required package: HSAUR3
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Loading required package: RColorBrewer
--- finished re-building 'Ch_multiple_linear_regression.Rnw'
--- re-building 'Ch_principal_components_analysis.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
--- finished re-building 'Ch_principal_components_analysis.Rnw'
--- re-building 'Ch_quantile_regression.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
no font could be found for family "Arial"
Error: processing vignette 'Ch_quantile_regression.Rnw' failed with diagnostics:
polygon edge not found
--- failed re-building 'Ch_quantile_regression.Rnw'
--- re-building 'Ch_recursive_partitioning.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Loading required package: grid
randomForest 4.7-1.1
Type rfNews() to see new features/changes/bug fixes.
Loading required package: libcoin
Loading required package: mvtnorm
Warning in length(just) : closing unused connection 4 ()
--- finished re-building 'Ch_recursive_partitioning.Rnw'
--- re-building 'Ch_simple_inference.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Loading required package: grid
Warning in wilcox.test.default(mooringdiff) :
cannot compute exact p-value with ties
Warning in wilcox.test.default(mooringdiff) :
cannot compute exact p-value with ties
--- finished re-building 'Ch_simple_inference.Rnw'
--- re-building 'Ch_simultaneous_inference.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Loading required package: mvtnorm
Loading required package: survival
Loading required package: TH.data
Loading required package: MASS
Attaching package: 'TH.data'
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geyser
The following object is masked from 'package:HSAUR3':
birds
Loading required package: Matrix
--- finished re-building 'Ch_simultaneous_inference.Rnw'
--- re-building 'Ch_survival_analysis.Rnw' using Sweave
Loading required package: HSAUR3
Loading required package: tools
Loading required package: grid
Loading required package: libcoin
Loading required package: mvtnorm
Warning in plot.window(...) :
"legend.text" is not a graphical parameter
Warning in plot.window(...) : "legend.bty" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in box(...) : "legend.text" is not a graphical parameter
Warning in box(...) : "legend.bty" is not a graphical parameter
Warning in title(...) : "legend.text" is not a graphical parameter
Warning in title(...) : "legend.bty" is not a graphical parameter
Warning in approximate(B = 10000) :
'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_survival_analysis.Rnw'
SUMMARY: processing the following files failed:
'Ch_cluster_analysis.Rnw' 'Ch_graphical_display.Rnw'
'Ch_quantile_regression.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64