CRAN Package Check Results for Package HSAUR3

Last updated on 2023-04-02 03:51:29 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-13 4.72 245.36 250.08 OK
r-devel-linux-x86_64-debian-gcc 1.0-13 3.30 195.41 198.71 OK
r-devel-linux-x86_64-fedora-clang 1.0-13 322.89 OK
r-devel-linux-x86_64-fedora-gcc 1.0-13 339.39 OK
r-devel-windows-x86_64 1.0-13 10.00 96.00 106.00 OK --no-vignettes
r-patched-linux-x86_64 1.0-13 6.66 243.70 250.36 OK
r-release-linux-x86_64 1.0-13 4.34 240.59 244.93 OK
r-release-macos-arm64 1.0-13 348.00 NOTE
r-release-macos-x86_64 1.0-13 231.00 OK
r-release-windows-x86_64 1.0-13 109.00 96.00 205.00 OK --no-vignettes
r-oldrel-macos-arm64 1.0-13 186.00 OK
r-oldrel-macos-x86_64 1.0-13 245.00 OK
r-oldrel-windows-ix86+x86_64 1.0-13 8.00 74.00 82.00 OK --no-vignettes

Check Details

Version: 1.0-13
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: Matrix
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    The following object is masked from 'package:HSAUR3':
    
     birds
    
    --- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'
    
    --- re-building 'Ch_analysing_longitudinal_dataII.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
    running glm to get initial regression estimate
    Loading required package: Matrix
    Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
     Model failed to converge with max|grad| = 0.197378 (tol = 0.002, component 1)
    --- finished re-building 'Ch_analysing_longitudinal_dataII.Rnw'
    
    --- re-building 'Ch_analysis_of_variance.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: RColorBrewer
    --- finished re-building 'Ch_analysis_of_variance.Rnw'
    
    --- re-building 'Ch_bayesian_inference.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: survival
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    --- finished re-building 'Ch_bayesian_inference.Rnw'
    
    --- re-building 'Ch_cluster_analysis.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Package 'mclust' version 6.0.0
    Type 'citation("mclust")' for citing this R package in publications.
    
    Attaching package: 'mvtnorm'
    
    The following object is masked from 'package:mclust':
    
     dmvnorm
    
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    
    Error: processing vignette 'Ch_cluster_analysis.Rnw' failed with diagnostics:
     chunk 5 (label = CA-pottery-distplot)
    Error in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     polygon edge not found
    
    --- failed re-building 'Ch_cluster_analysis.Rnw'
    
    --- re-building 'Ch_conditional_inference.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: survival
    Warning in chisq.test(suicides) :
     Chi-squared approximation may be incorrect
    Warning in approximate(B = 19999) :
     'B' is deprecated; use 'nresample' instead
    --- finished re-building 'Ch_conditional_inference.Rnw'
    
    --- re-building 'Ch_density_estimation.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    KernSmooth 2.23 loaded
    Copyright M. P. Wand 1997-2009
    Loading required package: lattice
    
    Attaching package: 'boot'
    
    The following object is masked from 'package:flexmix':
    
     boot
    
    The following object is masked from 'package:lattice':
    
     melanoma
    
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
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    Warning in title(...) : font "Symbol" could not be found for family ""
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    Warning in title(...) : font "Symbol" could not be found for family ""
    Warning in title(...) : font "Symbol" could not be found for family ""
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    Warning in title(...) : font "Symbol" could not be found for family ""
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    Warning in (function (s, units = "user", cex = NULL, font = NULL, vfont = NULL, :
     no font could be found for family "Arial"
    Warning in (function (s, units = "user", cex = NULL, font = NULL, vfont = NULL, :
     no font could be found for family "Arial"
    Warning in (function (s, units = "user", cex = NULL, font = NULL, vfont = NULL, :
     no font could be found for family "Arial"
    Warning in (function (s, units = "user", cex = NULL, font = NULL, vfont = NULL, :
     no font could be found for family "Arial"
    Warning in strwidth(title, units = "user", cex = title.cex, font = title.font) :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in persp.default(x = x, y = x, z = epavals, xlab = "x", ylab = "y", :
     no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
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    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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     no font could be found for family "Arial"
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    Warning in axis(side = side, at = at, labels = labels, ...) :
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    Warning in axis(side = side, at = at, labels = labels, ...) :
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    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Warning in persp.default(x = CYGOB1d$x1, y = CYGOB1d$x2, z = CYGOB1d$fhat, :
     no font could be found for family "Arial"
    Package 'mclust' version 6.0.0
    Type 'citation("mclust")' for citing this R package in publications.
    Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
     argument 'replacement' has length > 1 and only the first element will be used
    --- finished re-building 'Ch_density_estimation.Rnw'
    
    --- re-building 'Ch_errata.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    --- finished re-building 'Ch_errata.Rnw'
    
    --- re-building 'Ch_gam.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: nlme
    This is mgcv 1.8-42. For overview type 'help("mgcv-package")'.
    Loading required package: parallel
    Loading required package: stabs
    Loading required package: RColorBrewer
    --- finished re-building 'Ch_gam.Rnw'
    
    --- re-building 'Ch_graphical_display.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Checking rgeos availability: TRUE
    Please note that 'maptools' will be retired during 2023,
    plan transition at your earliest convenience;
    some functionality will be moved to 'sp'.
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    Error: processing vignette 'Ch_graphical_display.Rnw' failed with diagnostics:
    polygon edge not found
    --- failed re-building 'Ch_graphical_display.Rnw'
    
    --- re-building 'Ch_introduction_to_R.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Warning: closing unused connection 4 ()
    Error in quantile.default(x, prob = c(0.25, 0.75), names = FALSE) :
     missing values and NaN's not allowed if 'na.rm' is FALSE
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
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    Warning in axis(side = side, at = at, labels = labels, ...) :
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    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
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    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in axis(side = side, at = at, labels = labels, ...) :
     no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    Warning in title(...) : no font could be found for family "Arial"
    --- finished re-building 'Ch_introduction_to_R.Rnw'
    
    --- re-building 'Ch_logistic_regression_glm.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Waiting for profiling to be done...
    Loading required package: mvtnorm
    Loading required package: TH.data
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    The following object is masked from 'package:HSAUR3':
    
     birds
    
    Waiting for profiling to be done...
    --- finished re-building 'Ch_logistic_regression_glm.Rnw'
    
    --- re-building 'Ch_meta_analysis.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    --- finished re-building 'Ch_meta_analysis.Rnw'
    
    --- re-building 'Ch_missing_values.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    
    Attaching package: 'mice'
    
    The following object is masked from 'package:HSAUR3':
    
     toenail
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    --- finished re-building 'Ch_missing_values.Rnw'
    
    --- re-building 'Ch_multidimensional_scaling.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: RColorBrewer
    Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
     only 7 of the first 13 eigenvalues are > 0
    --- finished re-building 'Ch_multidimensional_scaling.Rnw'
    
    --- re-building 'Ch_multiple_linear_regression.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: RColorBrewer
    --- finished re-building 'Ch_multiple_linear_regression.Rnw'
    
    --- re-building 'Ch_principal_components_analysis.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    --- finished re-building 'Ch_principal_components_analysis.Rnw'
    
    --- re-building 'Ch_quantile_regression.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    Error: processing vignette 'Ch_quantile_regression.Rnw' failed with diagnostics:
    polygon edge not found
    --- failed re-building 'Ch_quantile_regression.Rnw'
    
    --- re-building 'Ch_recursive_partitioning.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: grid
    randomForest 4.7-1.1
    Type rfNews() to see new features/changes/bug fixes.
    Loading required package: libcoin
    Loading required package: mvtnorm
    Warning in length(just) : closing unused connection 4 ()
    --- finished re-building 'Ch_recursive_partitioning.Rnw'
    
    --- re-building 'Ch_simple_inference.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: grid
    Warning in wilcox.test.default(mooringdiff) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(mooringdiff) :
     cannot compute exact p-value with ties
    --- finished re-building 'Ch_simple_inference.Rnw'
    
    --- re-building 'Ch_simultaneous_inference.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    The following object is masked from 'package:HSAUR3':
    
     birds
    
    Loading required package: Matrix
    --- finished re-building 'Ch_simultaneous_inference.Rnw'
    
    --- re-building 'Ch_survival_analysis.Rnw' using Sweave
    Loading required package: HSAUR3
    Loading required package: tools
    Loading required package: grid
    Loading required package: libcoin
    Loading required package: mvtnorm
    Warning in plot.window(...) :
     "legend.text" is not a graphical parameter
    Warning in plot.window(...) : "legend.bty" is not a graphical parameter
    Warning in plot.xy(xy, type, ...) :
     "legend.text" is not a graphical parameter
    Warning in plot.xy(xy, type, ...) :
     "legend.bty" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.text" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.bty" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.text" is not a graphical parameter
    Warning in axis(side = side, at = at, labels = labels, ...) :
     "legend.bty" is not a graphical parameter
    Warning in box(...) : "legend.text" is not a graphical parameter
    Warning in box(...) : "legend.bty" is not a graphical parameter
    Warning in title(...) : "legend.text" is not a graphical parameter
    Warning in title(...) : "legend.bty" is not a graphical parameter
    Warning in approximate(B = 10000) :
     'B' is deprecated; use 'nresample' instead
    --- finished re-building 'Ch_survival_analysis.Rnw'
    
    SUMMARY: processing the following files failed:
     'Ch_cluster_analysis.Rnw' 'Ch_graphical_display.Rnw'
     'Ch_quantile_regression.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64