CRAN Package Check Results for Package DoseFinding

Last updated on 2024-06-16 05:52:51 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-1 14.77 580.69 595.46 OK
r-devel-linux-x86_64-debian-gcc 1.1-1 12.27 395.17 407.44 OK
r-devel-linux-x86_64-fedora-clang 1.1-1 738.15 OK
r-devel-linux-x86_64-fedora-gcc 1.1-1 698.39 OK
r-devel-windows-x86_64 1.1-1 16.00 378.00 394.00 OK
r-patched-linux-x86_64 1.1-1 15.39 516.47 531.86 ERROR
r-release-linux-x86_64 1.1-1 11.85 545.10 556.95 OK
r-release-macos-arm64 1.1-1 172.00 OK
r-release-macos-x86_64 1.1-1 278.00 OK
r-release-windows-x86_64 1.1-1 17.00 345.00 362.00 FAIL
r-oldrel-macos-arm64 1.1-1 213.00 OK
r-oldrel-macos-x86_64 1.1-1 408.00 OK
r-oldrel-windows-x86_64 1.1-1 21.00 509.00 530.00 OK

Check Details

Version: 1.1-1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘RBesT’ Flavor: r-patched-linux-x86_64

Version: 1.1-1
Check: examples
Result: ERROR Running examples in ‘DoseFinding-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: bMCTtest > ### Title: Performs Bayesian multiple contrast test > ### Aliases: bMCTtest > > ### ** Examples > > > require(RBesT) Loading required package: RBesT Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘RBesT’ > > ############################### > ## Normal outcome > ############################### > > data(biom) > ## define shapes for which to calculate optimal contrasts > doses <- c(0, 0.05, 0.2, 0.6, 1) > modlist <- Mods(emax = 0.05, linear = NULL, logistic = c(0.5, 0.1), + linInt = c(0, 1, 1, 1), doses = doses) > ## specify an informative prior for placebo, weakly informative for other arms > plc_prior <- mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) Error in mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) : could not find function "mixnorm" Execution halted Flavor: r-patched-linux-x86_64

Version: 1.1-1
Check: tests
Result: ERROR Running ‘testgFit.R’ [2s/3s] Running ‘testplanMod.R’ [0s/0s] Running ‘testsDesign.R’ [5s/5s] Running ‘testsFitting.R’ [2s/3s] Running ‘testsMCPMod.R’ [4s/4s] Running ‘testsMCT.R’ [5s/6s] Running ‘testsoptContr.R’ [2s/2s] Running ‘testsplotDRMod.R’ [0s/0s] Running ‘testssampSize.R’ [0s/0s] Running ‘testssamplMod.R’ [4s/4s] Running ‘testthat.R’ [22s/29s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > ## Note: Files in this directory are old test cases that accumulated > ## historically over time, many of them commented out for time reasons > ## (and unorganized due to lack of anything close to testthat at the > ## time of creation). The testthat sub-directory now contains a > ## selected subset of these tests (with some additions) that have been > ## brought in the testthat format. > library(testthat) > library(DoseFinding) Loading required package: ggplot2 Loading required package: lattice Loading required package: mvtnorm > options(testthat.progress.max_fails = 100) > > Sys.unsetenv("R_TESTS") > test_check("DoseFinding") Running simulations Scenario 1/5 | | | 0% | |* | 1% | |* | 2% | |** | 3% | |*** | 4% | |**** | 5% | |**** | 6% | |***** | 7% | |****** | 8% | |****** | 9% | |******* | 10% | |******** | 11% | |******** | 12% | |********* | 13% | |********** | 14% | |********** | 15% | |*********** | 16% | |************ | 17% | |************* | 18% | |************* | 19% | |************** | 20% | |*************** | 21% | |*************** | 22% | |**************** | 23% | |***************** | 24% | |****************** | 25% | |****************** | 26% | |******************* | 27% | |******************** | 28% | 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|***************************************************************** | 93% | |****************************************************************** | 94% | |****************************************************************** | 95% | |******************************************************************* | 96% | |******************************************************************** | 97% | |********************************************************************* | 98% | |********************************************************************* | 99% | |**********************************************************************| 100% [ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (2): 'test-optContr.R:81:3', 'test-planMod.R:27:3' • RBesT package not available (10): 'test-bMCTtest.R:57:3', 'test-bMCTtest.R:81:3', 'test-bMCTtest.R:103:3', 'test-bMCTtest.R:125:3', 'test-bMCTtest.R:147:3', 'test-bMCTtest.R:169:3', 'test-bMCTtest.R:189:3', 'test-bMCTtest.R:213:3', 'test-bMCTtest.R:228:3', 'test-bMCTtest.R:244:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bMCTtest.R:266:3'): Error message for incorrect prior arguments ── Error in `mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))`: could not find function "mixnorm" [ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 1.1-1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'analysis_normal.Rmd' using rmarkdown --- finished re-building 'analysis_normal.Rmd' --- re-building 'binary_data.Rmd' using rmarkdown Warning in system(command) : 'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe +RTS -K512m -RTS binary_data.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc1e0706ad2664.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --highlight-style Error: processing vignette 'binary_data.Rmd' failed with diagnostics: pandoc document conversion failed with error 127 --- failed re-building 'binary_data.Rmd' --- re-building 'faq.Rmd' using rmarkdown Error: processing vignette 'faq.Rmd' failed with diagnostics: 'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe --version' --- failed re-building 'faq.Rmd' --- re-building 'mult_regimen.Rmd' using rmarkdown --- finished re-building 'mult_regimen.Rmd' --- re-building 'overview.Rmd' using rmarkdown --- finished re-building 'overview.Rmd' --- re-building 'sample_size.Rmd' using rmarkdown Quitting from lines 184-190 [tdci93] (sample_size.Rmd) Error: processing vignette 'sample_size.Rmd' failed with diagnostics: cannot allocate vector of size 1 Kb --- failed re-building 'sample_size.Rmd' SUMMARY: processing the following files failed: 'binary_data.Rmd' 'faq.Rmd' 'sample_size.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64

Version: 1.1-1
Check: PDF version of manual
Result: WARN LaTeX errors when creating PDF version. This typically indicates Rd problems. Flavor: r-release-windows-x86_64

Version: 1.1-1
Check: PDF version of manual without index
Result: ERROR Re-running with no redirection of stdout/stderr. Flavor: r-release-windows-x86_64

Version: 1.1-1
Check: HTML version of manual
Result: FAIL
Flavor: r-release-windows-x86_64