Last updated on 2025-03-07 05:51:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 6.32 | 718.85 | 725.17 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 4.90 | 497.34 | 502.24 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 1273.14 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 1158.94 | NOTE | |||
| r-devel-macos-arm64 | 0.4.0 | 268.00 | OK | |||
| r-devel-macos-x86_64 | 0.4.0 | 488.00 | NOTE | |||
| r-devel-windows-x86_64 | 0.4.0 | 9.00 | 425.00 | 434.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.0 | ERROR | ||||
| r-release-linux-x86_64 | 0.4.0 | 5.38 | 668.25 | 673.63 | ERROR | |
| r-release-macos-arm64 | 0.4.0 | 219.00 | NOTE | |||
| r-release-macos-x86_64 | 0.4.0 | 324.00 | NOTE | |||
| r-release-windows-x86_64 | 0.4.0 | 8.00 | 436.00 | 444.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.4.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.4.0 | 377.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.4.0 | 11.00 | 591.00 | 602.00 | ERROR |
Version: 0.4.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘benchmarkCohortCharacteristics.R’ ‘checks.R’ ‘plot.R’
‘plotCharacteristics.Rd’ ‘plotCohortAttrition.R’
‘plotCohortAttrition.Rd’ ‘plotCohortCount.Rd’ ‘plotCohortTiming.R’
‘plotComparedLargeScaleCharacteristics.R’
‘plotLargeScaleCharacteristics.R’ ‘summariseCharacteristics.R’
‘summariseCharacteristics.Rd’ ‘summariseCohortAttrition.R’
‘summariseCohortAttrition.Rd’ ‘summariseCohortCount.R’
‘summariseCohortCount.Rd’ ‘summariseCohortOverlap.R’
‘summariseCohortOverlap.Rd’ ‘summariseCohortTiming.R’
‘summariseCohortTiming.Rd’ ‘summariseLargeScaleCharacteristics.R’
‘table.R’ ‘tableCharacteristics.R’ ‘tableCohortAttrition.R’
‘tableCohortCount.R’ ‘tableCohortOverlap.R’ ‘tableCohortTiming.R’
‘tableLargeScaleCharacteristics.R’ ‘utilities.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [467s/282s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:136:3',
'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3',
'test-plotCohortTiming.R:94:3', 'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:120:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1159:3',
'test-summariseCharacteristics.R:1389:3',
'test-summariseCharacteristics.R:1505:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:337:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <rlang_error> with text:
Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! rapi_prepare: Failed to prepare query SELECT
strata_id,
SUM(variable_00047 * ".data".id_sxi) AS counts_variable_00047,
SUM(variable_00048 * ".data".id_sxi) AS counts_variable_00048,
SUM(variable_00049 * ".data".id_sxi) AS counts_variable_00049
FROM (
SELECT q01.*, 1.0 AS id_sxi
FROM (
SELECT strata_id, subject_id, variable_00047, variable_00048, variable_00049
FROM og_066_1741013870
LEFT JOIN test_dus_cohort_set
ON (og_066_1741013870.cohort_definition_id = test_dus_cohort_set.cohort_definition_id)
INNER JOIN og_076_1741013875
ON (test_dus_cohort_set.cohort_name = og_076_1741013875.cohort_name)
) q01
) q01
GROUP BY strata_id
Error: Binder Error: Referenced table ".data" not found!
Candidate tables: "q01"
LINE 3: SUM(variable_00047 * ".data".id_sxi) AS counts_variable_00047,
^
── Failure ('test-summariseCharacteristics.R:346:3'): test summariseCharacteristics ──
any(...) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘benchmarkCohortCharacteristics.R’ ‘checks.R’ ‘plot.R’
‘plotCohortAttrition.R’ ‘plotCohortTiming.R’
‘plotComparedLargeScaleCharacteristics.R’
‘plotLargeScaleCharacteristics.R’ ‘summariseCharacteristics.R’
‘summariseCohortAttrition.R’ ‘summariseCohortCount.R’
‘summariseCohortOverlap.R’ ‘summariseCohortTiming.R’
‘summariseLargeScaleCharacteristics.R’ ‘table.R’
‘tableCharacteristics.R’ ‘tableCohortAttrition.R’
‘tableCohortCount.R’ ‘tableCohortOverlap.R’ ‘tableCohortTiming.R’
‘tableLargeScaleCharacteristics.R’ ‘utilities.R’
Flavor: r-devel-macos-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [208s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:136:3',
'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3',
'test-plotCohortTiming.R:94:3', 'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:120:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1159:3',
'test-summariseCharacteristics.R:1389:3',
'test-summariseCharacteristics.R:1505:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:337:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <rlang_error> with text:
Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! rapi_prepare: Failed to prepare query SELECT
strata_id,
SUM(variable_00047 * ".data".id_xrj) AS counts_variable_00047,
SUM(variable_00048 * ".data".id_xrj) AS counts_variable_00048,
SUM(variable_00049 * ".data".id_xrj) AS counts_variable_00049
FROM (
SELECT q01.*, 1.0 AS id_xrj
FROM (
SELECT strata_id, subject_id, variable_00047, variable_00048, variable_00049
FROM og_066_1740759305
LEFT JOIN test_dus_cohort_set
ON (og_066_1740759305.cohort_definition_id = test_dus_cohort_set.cohort_definition_id)
INNER JOIN og_076_1740759309
ON (test_dus_cohort_set.cohort_name = og_076_1740759309.cohort_name)
) q01
) q01
GROUP BY strata_id
Error: Binder Error: Referenced table ".data" not found!
Candidate tables: "q01"
LINE 3: SUM(variable_00047 * ".data".id_xrj) AS counts_variable_00047,
^
── Failure ('test-summariseCharacteristics.R:346:3'): test summariseCharacteristics ──
any(...) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [436s/263s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:136:3',
'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3',
'test-plotCohortTiming.R:94:3', 'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:120:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1159:3',
'test-summariseCharacteristics.R:1389:3',
'test-summariseCharacteristics.R:1505:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:337:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <rlang_error> with text:
Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! rapi_prepare: Failed to prepare query SELECT
strata_id,
SUM(variable_00047 * ".data".id_eiy) AS counts_variable_00047,
SUM(variable_00048 * ".data".id_eiy) AS counts_variable_00048,
SUM(variable_00049 * ".data".id_eiy) AS counts_variable_00049
FROM (
SELECT q01.*, 1.0 AS id_eiy
FROM (
SELECT strata_id, subject_id, variable_00047, variable_00048, variable_00049
FROM og_066_1741101839
LEFT JOIN test_dus_cohort_set
ON (og_066_1741101839.cohort_definition_id = test_dus_cohort_set.cohort_definition_id)
INNER JOIN og_076_1741101843
ON (test_dus_cohort_set.cohort_name = og_076_1741101843.cohort_name)
) q01
) q01
GROUP BY strata_id
Error: Binder Error: Referenced table ".data" not found!
Candidate tables: "q01"
LINE 3: SUM(variable_00047 * ".data".id_eiy) AS counts_variable_00047,
^
── Failure ('test-summariseCharacteristics.R:346:3'): test summariseCharacteristics ──
any(...) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [434s/260s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:136:3',
'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3',
'test-plotCohortTiming.R:94:3', 'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:120:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1159:3',
'test-summariseCharacteristics.R:1389:3',
'test-summariseCharacteristics.R:1505:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:337:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <rlang_error> with text:
Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! rapi_prepare: Failed to prepare query SELECT
strata_id,
SUM(variable_00047 * ".data".id_uzu) AS counts_variable_00047,
SUM(variable_00048 * ".data".id_uzu) AS counts_variable_00048,
SUM(variable_00049 * ".data".id_uzu) AS counts_variable_00049
FROM (
SELECT q01.*, 1.0 AS id_uzu
FROM (
SELECT strata_id, subject_id, variable_00047, variable_00048, variable_00049
FROM og_066_1741187271
LEFT JOIN test_dus_cohort_set
ON (og_066_1741187271.cohort_definition_id = test_dus_cohort_set.cohort_definition_id)
INNER JOIN og_076_1741187275
ON (test_dus_cohort_set.cohort_name = og_076_1741187275.cohort_name)
) q01
) q01
GROUP BY strata_id
Error: Binder Error: Referenced table ".data" not found!
Candidate tables: "q01"
LINE 3: SUM(variable_00047 * ".data".id_uzu) AS counts_variable_00047,
^
── Failure ('test-summariseCharacteristics.R:346:3'): test summariseCharacteristics ──
any(...) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4.0
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 3.5Mb
help 1.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [300s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:136:3',
'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3',
'test-plotCohortTiming.R:94:3', 'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:120:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-summariseCharacteristics.R:1159:3',
'test-summariseCharacteristics.R:1389:3',
'test-summariseCharacteristics.R:1505:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summariseCharacteristics.R:337:3'): test summariseCharacteristics ──
Expected `... <- NULL` to run without any errors.
i Actually got a <rlang_error> with text:
Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! rapi_prepare: Failed to prepare query SELECT
strata_id,
SUM(variable_00047 * ".data".id_vzm) AS counts_variable_00047,
SUM(variable_00048 * ".data".id_vzm) AS counts_variable_00048,
SUM(variable_00049 * ".data".id_vzm) AS counts_variable_00049
FROM (
SELECT q01.*, 1.0 AS id_vzm
FROM (
SELECT strata_id, subject_id, variable_00047, variable_00048, variable_00049
FROM og_066_1740980358
LEFT JOIN test_dus_cohort_set
ON (og_066_1740980358.cohort_definition_id = test_dus_cohort_set.cohort_definition_id)
INNER JOIN og_076_1740980363
ON (test_dus_cohort_set.cohort_name = og_076_1740980363.cohort_name)
) q01
) q01
GROUP BY strata_id
Error: Binder Error: Referenced table ".data" not found!
Candidate tables: "q01"
LINE 3: SUM(variable_00047 * ".data".id_vzm) AS counts_variable_00047,
^
── Failure ('test-summariseCharacteristics.R:346:3'): test summariseCharacteristics ──
any(...) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 2 | WARN 4 | SKIP 17 | PASS 208 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64