Last updated on 2026-08-01 06:53:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 76.18 | 175.22 | 251.40 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 55.38 | 137.58 | 192.96 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 96.00 | 275.32 | 371.32 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 65.00 | 127.77 | 192.77 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 83.00 | 209.00 | 292.00 | OK | |
| r-patched-linux-x86_64 | 1.0.4 | 78.71 | 178.61 | 257.32 | OK | |
| r-release-linux-x86_64 | 1.0.4 | 74.07 | 178.43 | 252.50 | OK | |
| r-release-macos-arm64 | 1.0.4 | 16.00 | 47.00 | 63.00 | OK | |
| r-release-macos-x86_64 | 1.0.4 | 52.00 | 216.00 | 268.00 | OK | |
| r-release-windows-x86_64 | 1.0.4 | 85.00 | 208.00 | 293.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 14.00 | 38.00 | 52.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.4 | 51.00 | 193.00 | 244.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.4 | 124.00 | 276.00 | 400.00 | OK |
Version: 1.0.4
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp01xzAC’ ‘~/tmp/scratch/Rtmp0HZjAs’
‘~/tmp/scratch/Rtmp0IQXoE’ ‘~/tmp/scratch/Rtmp1BpjpC’
‘~/tmp/scratch/Rtmp1GFpDy’ ‘~/tmp/scratch/Rtmp1Rx3u4’
‘~/tmp/scratch/Rtmp1ZNf15’ ‘~/tmp/scratch/Rtmp1yT2oa’
‘~/tmp/scratch/Rtmp2He5fK’ ‘~/tmp/scratch/Rtmp2yn7mZ’
‘~/tmp/scratch/Rtmp3Cz89M’ ‘~/tmp/scratch/Rtmp3ebm9K’
‘~/tmp/scratch/Rtmp3m8PJK’ ‘~/tmp/scratch/Rtmp5LNpfi’
‘~/tmp/scratch/Rtmp5R3XI1’ ‘~/tmp/scratch/Rtmp5gq6WR’
‘~/tmp/scratch/Rtmp7UvPAj’ ‘~/tmp/scratch/Rtmp7cFvB7’
‘~/tmp/scratch/Rtmp7p2J3i’ ‘~/tmp/scratch/Rtmp85dCqC’
‘~/tmp/scratch/Rtmp8ZfaUB’ ‘~/tmp/scratch/Rtmp8haADb’
‘~/tmp/scratch/Rtmp8sWfQG’ ‘~/tmp/scratch/Rtmp98Bf9s’
‘~/tmp/scratch/Rtmp9ETsyb’ ‘~/tmp/scratch/Rtmp9EnKGy’
‘~/tmp/scratch/Rtmp9qbhvM’ ‘~/tmp/scratch/RtmpAcPiFU’
‘~/tmp/scratch/RtmpC3w6zm’ ‘~/tmp/scratch/RtmpC9WIFE’
‘~/tmp/scratch/RtmpCRAc3V’ ‘~/tmp/scratch/RtmpDcmoem’
‘~/tmp/scratch/RtmpEmcBjX’ ‘~/tmp/scratch/RtmpF4uYVq’
‘~/tmp/scratch/RtmpFCcotf’ ‘~/tmp/scratch/RtmpFNHnbG’
‘~/tmp/scratch/RtmpGKyXLv’ ‘~/tmp/scratch/RtmpGZcVlU’
‘~/tmp/scratch/RtmpGnJCcj’ ‘~/tmp/scratch/RtmpGnl60y’
‘~/tmp/scratch/RtmpHa8crj’ ‘~/tmp/scratch/RtmpHcw8IV’
‘~/tmp/scratch/RtmpIHn9Bf’ ‘~/tmp/scratch/RtmpIUlY8E’
‘~/tmp/scratch/RtmpIu9ntH’ ‘~/tmp/scratch/RtmpJu3oaF’
‘~/tmp/scratch/RtmpK5GnQs’ ‘~/tmp/scratch/RtmpKfssOU’
‘~/tmp/scratch/RtmpKzWc0P’ ‘~/tmp/scratch/RtmpLWezDZ’
‘~/tmp/scratch/RtmpLjVtc9’ ‘~/tmp/scratch/RtmpLjhYZZ’
‘~/tmp/scratch/RtmpM6TurO’ ‘~/tmp/scratch/RtmpMAqJJw’
‘~/tmp/scratch/RtmpMwIurn’ ‘~/tmp/scratch/RtmpNM0H9s’
‘~/tmp/scratch/RtmpNZuzSU’ ‘~/tmp/scratch/RtmpPRMSNS’
‘~/tmp/scratch/RtmpQCvqTr’ ‘~/tmp/scratch/RtmpQDUYTq’
‘~/tmp/scratch/RtmpQlmIPT’ ‘~/tmp/scratch/RtmpR22hkf’
‘~/tmp/scratch/RtmpRLueaJ’ ‘~/tmp/scratch/RtmpSDD3yj’
‘~/tmp/scratch/RtmpT4yCHj’ ‘~/tmp/scratch/RtmpTlY1cm’
‘~/tmp/scratch/RtmpTzbUoQ’ ‘~/tmp/scratch/RtmpV0ef63’
‘~/tmp/scratch/RtmpV1Tlng’ ‘~/tmp/scratch/RtmpVvVV2M’
‘~/tmp/scratch/RtmpWAOjf2’ ‘~/tmp/scratch/RtmpWamOcF’
‘~/tmp/scratch/RtmpWiSTmr’ ‘~/tmp/scratch/RtmpX2XCjh’
‘~/tmp/scratch/RtmpXEj2CE’ ‘~/tmp/scratch/RtmpXLlyne’
‘~/tmp/scratch/RtmpXOFPu6’ ‘~/tmp/scratch/RtmpXlNj1n’
‘~/tmp/scratch/RtmpYeY1Lh’ ‘~/tmp/scratch/RtmpZ9pXnC’
‘~/tmp/scratch/RtmpZTJ6on’ ‘~/tmp/scratch/RtmpaliuWV’
‘~/tmp/scratch/RtmpazsbfO’ ‘~/tmp/scratch/Rtmpb7uQ64’
‘~/tmp/scratch/Rtmpd5alcY’ ‘~/tmp/scratch/RtmpdPeRp4’
‘~/tmp/scratch/RtmpdhIg75’ ‘~/tmp/scratch/RtmpeDxXfj’
‘~/tmp/scratch/RtmperiBOK’ ‘~/tmp/scratch/Rtmpexf50X’
‘~/tmp/scratch/RtmpfVzzZU’ ‘~/tmp/scratch/RtmpfYl5N3’
‘~/tmp/scratch/RtmpgFGqtD’ ‘~/tmp/scratch/RtmpgPWbft’
‘~/tmp/scratch/RtmpgRHY4K’ ‘~/tmp/scratch/RtmpghNsOE’
‘~/tmp/scratch/RtmpgnOd2R’ ‘~/tmp/scratch/Rtmpgo8zmC’
‘~/tmp/scratch/RtmpgvW9YJ’ ‘~/tmp/scratch/Rtmph2V5PO’
‘~/tmp/scratch/RtmphsfIG1’ ‘~/tmp/scratch/Rtmphymg4E’
‘~/tmp/scratch/RtmpiF9EsC’ ‘~/tmp/scratch/RtmpiaQkVU’
‘~/tmp/scratch/Rtmpiqzx3X’ ‘~/tmp/scratch/Rtmpiraa8t’
‘~/tmp/scratch/RtmpjdBQmd’ ‘~/tmp/scratch/Rtmpk6ngND’
‘~/tmp/scratch/RtmpkPLicF’ ‘~/tmp/scratch/Rtmpkdor0q’
‘~/tmp/scratch/RtmplHaaLf’ ‘~/tmp/scratch/RtmplPMhWK’
‘~/tmp/scratch/Rtmpm2ftZy’ ‘~/tmp/scratch/Rtmpm7FXt0’
‘~/tmp/scratch/RtmpmTD55S’ ‘~/tmp/scratch/RtmpmVXYMg’
‘~/tmp/scratch/RtmpmX59ed’ ‘~/tmp/scratch/RtmpminH6z’
‘~/tmp/scratch/Rtmpmv1BGJ’ ‘~/tmp/scratch/Rtmpn0Taww’
‘~/tmp/scratch/RtmpnNRc4F’ ‘~/tmp/scratch/RtmpnQzhnt’
‘~/tmp/scratch/RtmpoHhS4L’ ‘~/tmp/scratch/RtmpoUJYQI’
‘~/tmp/scratch/Rtmpp1ipMt’ ‘~/tmp/scratch/RtmppACKAj’
‘~/tmp/scratch/RtmppsZKBJ’ ‘~/tmp/scratch/Rtmppyhqsm’
‘~/tmp/scratch/RtmprJ1QEx’ ‘~/tmp/scratch/RtmprhwgQc’
‘~/tmp/scratch/RtmpsZOg5H’ ‘~/tmp/scratch/Rtmpsniu69’
‘~/tmp/scratch/RtmptZzfPb’ ‘~/tmp/scratch/RtmpvHEFJN’
‘~/tmp/scratch/RtmpvKQ0Yw’ ‘~/tmp/scratch/RtmpvWZ9mt’
‘~/tmp/scratch/RtmpwUQLif’ ‘~/tmp/scratch/Rtmpwtek8s’
‘~/tmp/scratch/Rtmpx5IjSy’ ‘~/tmp/scratch/RtmpxCLZXw’
‘~/tmp/scratch/Rtmpy5taFJ’ ‘~/tmp/scratch/RtmpyTHkir’
‘~/tmp/scratch/Rtmpyeh0WC’ ‘~/tmp/scratch/RtmpyghYbr’
‘~/tmp/scratch/Rtmpz2NoJm’ ‘~/tmp/scratch/Rtmpz5VVXc’
‘~/tmp/scratch/RtmpzFOko2’ ‘~/tmp/scratch/RtmpzOX4bd’
‘~/tmp/scratch/RtmpzQp43F’ ‘~/tmp/scratch/xvfb-run.1RaAeo’
‘~/tmp/scratch/xvfb-run.2UBAr4’ ‘~/tmp/scratch/xvfb-run.4Q2J2h’
‘~/tmp/scratch/xvfb-run.4TIa2r’ ‘~/tmp/scratch/xvfb-run.4pPBc3’
‘~/tmp/scratch/xvfb-run.5s63x2’ ‘~/tmp/scratch/xvfb-run.664mr2’
‘~/tmp/scratch/xvfb-run.9IutqI’ ‘~/tmp/scratch/xvfb-run.9SZlIu’
‘~/tmp/scratch/xvfb-run.9cXSES’ ‘~/tmp/scratch/xvfb-run.AWxkP0’
‘~/tmp/scratch/xvfb-run.Ad1Wt4’ ‘~/tmp/scratch/xvfb-run.CCtQ47’
‘~/tmp/scratch/xvfb-run.CiLhH8’ ‘~/tmp/scratch/xvfb-run.F26PTS’
‘~/tmp/scratch/xvfb-run.GQ8xTD’ ‘~/tmp/scratch/xvfb-run.ISsmzm’
‘~/tmp/scratch/xvfb-run.JianIS’ ‘~/tmp/scratch/xvfb-run.KRTRi2’
‘~/tmp/scratch/xvfb-run.LgygOS’ ‘~/tmp/scratch/xvfb-run.MVdONI’
‘~/tmp/scratch/xvfb-run.N3QpEq’ ‘~/tmp/scratch/xvfb-run.N95guh’
‘~/tmp/scratch/xvfb-run.R776y9’ ‘~/tmp/scratch/xvfb-run.SU2F88’
‘~/tmp/scratch/xvfb-run.SdeM2R’ ‘~/tmp/scratch/xvfb-run.To8iwd’
‘~/tmp/scratch/xvfb-run.U14FCg’ ‘~/tmp/scratch/xvfb-run.UQIQZT’
‘~/tmp/scratch/xvfb-run.UgbUi4’ ‘~/tmp/scratch/xvfb-run.VsfzT3’
‘~/tmp/scratch/xvfb-run.W55aXy’ ‘~/tmp/scratch/xvfb-run.WEiN6I’
‘~/tmp/scratch/xvfb-run.WfxW42’ ‘~/tmp/scratch/xvfb-run.XbbfQB’
‘~/tmp/scratch/xvfb-run.XtCS14’ ‘~/tmp/scratch/xvfb-run.YcV4cZ’
‘~/tmp/scratch/xvfb-run.dcRrk6’ ‘~/tmp/scratch/xvfb-run.dddDCH’
‘~/tmp/scratch/xvfb-run.eOIHiz’ ‘~/tmp/scratch/xvfb-run.g2sNVQ’
‘~/tmp/scratch/xvfb-run.gYYxmS’ ‘~/tmp/scratch/xvfb-run.gaKlFw’
‘~/tmp/scratch/xvfb-run.goIioR’ ‘~/tmp/scratch/xvfb-run.hYueWa’
‘~/tmp/scratch/xvfb-run.hbqOVR’ ‘~/tmp/scratch/xvfb-run.iZgqc6’
‘~/tmp/scratch/xvfb-run.idTs7b’ ‘~/tmp/scratch/xvfb-run.iv173i’
‘~/tmp/scratch/xvfb-run.jCADUr’ ‘~/tmp/scratch/xvfb-run.jN1Fi8’
‘~/tmp/scratch/xvfb-run.lUDyXA’ ‘~/tmp/scratch/xvfb-run.mcwcT8’
‘~/tmp/scratch/xvfb-run.nEBx6P’ ‘~/tmp/scratch/xvfb-run.pjWQt9’
‘~/tmp/scratch/xvfb-run.qLGTeN’ ‘~/tmp/scratch/xvfb-run.qh8wZZ’
‘~/tmp/scratch/xvfb-run.rKoegQ’ ‘~/tmp/scratch/xvfb-run.rV5A3d’
‘~/tmp/scratch/xvfb-run.sjrFnf’ ‘~/tmp/scratch/xvfb-run.tWcw0Q’
‘~/tmp/scratch/xvfb-run.vBuinJ’ ‘~/tmp/scratch/xvfb-run.vJQ7lk’
‘~/tmp/scratch/xvfb-run.vhuUA2’ ‘~/tmp/scratch/xvfb-run.wG1YGU’
‘~/tmp/scratch/xvfb-run.xq7EZr’ ‘~/tmp/scratch/xvfb-run.zHqRRK’
‘~/tmp/scratch/xvfb-run.zp0vOi’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Introduction.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: cpp_horseshoe(X, Y, intercept, as.integer(nburn), as.integer(npost), seed, verbose, as.integer(printevery), as.integer(chain_index))
2: horseshoe_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain)
3: eval(c.expr, envir = args, enclos = envir)
4: eval(c.expr, envir = args, enclos = envir)
5: doTryCatch(return(expr), name, parentenv, handler)
6:
Traceback:
1: cpp_horseshoe(X, Y, intercept, as.integer(nburn), as.integer(npost), seed, verbose, as.integer(printevery), as.integer(chain_index))
2: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(eval(c.expr, envir = args, enclos = envir), error = function(e) e)
9: horseshoe_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain)
3: eval(c.expr, envir = args, enclos = envir)
4: eval(c.expr, envir = args, enclos = envir)FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
5: doTryCatch(return(expr), name, parentenv, handler)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(eval(c.expr, envir = args, enclos = envir), error = function(e) e)
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) {11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile)
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
.Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))18: lapply(seq_len(cores), inner.do)
19: mclapply(argsList, FUN, mc.preschedule = preschedule, mc.set.seed = set.seed, mc.silent = silent, mc.cores = cores)
20: e$fun(obj, substitute(ex), parent.frame(), e$data)
21: foreach::foreach(chain = 1:nchains, .combine = list, .multicombine = TRUE, .maxcombine = ifelse(nchains >= 2, nchains, 2)) %dopar% {
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: mclapply(argsList, FUN, mc.preschedule = preschedule, mc.set.seed = set.seed, mc.silent = silent, mc.cores = cores) seed_chain = if (!is.null(seed)) seed + chain else NULL return(switch(model, Multi_Laplace = { multi_laplace_mcmc(X, Y, intercept = !standardize, h = extra_parameters$h,
20: e$fun(obj, substitute(ex), parent.frame(), e$data)
21: foreach::foreach(chain = 1:nchains, .combine = list, .multicombine = TRUE, .maxcombine = ifelse(nchains >= 2, nchains, 2)) %dopar% { v = extra_parameters$v, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Horseshoe = { horseshoe_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, ARD = { ARD_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) seed_chain = if (!is.null(seed)) seed + chain else NULL return(switch(model, Multi_Laplace = { multi_laplace_mcmc(X, Y, intercept = !standardize, h = extra_parameters$h, v = extra_parameters$v, nburn = nburn, npost = npost, }, Spike_Laplace = { spike_laplace_partially_mcmc(X, Y, intercept = !standardize, a = extra_parameters$a, b = extra_parameters$b, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Horseshoe = { horseshoe_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, ARD = { ARD_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Spike_Laplace = { }))}
22: withCallingHandlers(expr, warning = function(w) if (inherits(w, spike_laplace_partially_mcmc(X, Y, intercept = !standardize, a = extra_parameters$a, b = extra_parameters$b, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) })) classes)) tryInvokeRestart("muffleWarning"))
23: suppressWarnings(foreach::foreach(chain = 1:nchains, .combine = list, .multicombine = TRUE, .maxcombine = ifelse(nchains >= 2, }
22: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
23: suppressWarnings(foreach::foreach(chain = 1:nchains, .combine = list, .multicombine = TRUE, .maxcombine = ifelse(nchains >= 2, nchains, 2)) %dopar% { nchains, 2)) %dopar% { seed_chain = if (!is.null(seed)) seed + chain else NULL return(switch(model, Multi_Laplace = { multi_laplace_mcmc(X, Y, intercept = !standardize, h = extra_parameters$h, v = extra_parameters$v, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Horseshoe = { seed_chain = if (!is.null(seed)) seed + chain else NULL return(switch(model, Multi_Laplace = { multi_laplace_mcmc(X, Y, intercept = !standardize, h = extra_parameters$h, v = extra_parameters$v, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Horseshoe = { horseshoe_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, ARD = { ARD_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Spike_Laplace = { spike_laplace_partially_mcmc(X, Y, intercept = !standardize, a = extra_parameters$a, b = extra_parameters$b, nburn = nburn, horseshoe_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, ARD = { npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }))})
24: BMI_LASSO(data$data_MI$X, data$data_MI$Y, model = "Horseshoe", nburn = 4000, npost = 4000, output_verbose = FALSE, nchains = 2, ARD_mcmc(X, Y, intercept = !standardize, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, printevery = printevery, chain_index = chain) }, Spike_Laplace = { spike_laplace_partially_mcmc(X, Y, intercept = !standardize, a = extra_parameters$a, b = extra_parameters$b, nburn = nburn, npost = npost, seed = seed_chain, verbose = output_verbose, ncores = 2, seed = seed)
25: eval(expr, envir) printevery = printevery, chain_index = chain) }))})
26: eval(expr, envir)
27: withVisible(eval(expr, envir))24: BMI_LASSO(data$data_MI$X, data$data_MI$Y, model = "Horseshoe", nburn = 4000, npost = 4000, output_verbose = FALSE, nchains = 2, ncores = 2, seed = seed)
28: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd)
25: eval(expr, envir)
26: eval(expr, envir)
27: { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) }withVisible(eval(expr, envir))
28: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") } }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd)}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
29: eval(call)
stop = invokeRestart("eval_stop"), error = NULL)})
29: eval(call)30: eval(call)
31: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()
30: eval(call)
31: watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
32: doWithOneRestart(return(expr), restart)
33: withOneRestart(expr, restarts[[1L]])32: doWithOneRestart(return(expr), restart)
33: withOneRestart(expr, restarts[[1L]])
34: withRestartList(expr, restarts[-nr])
35:
34: withRestartList(expr, restarts[-nr])
35: doWithOneRestart(return(expr), restart)
doWithOneRestart(return(expr), restart)
36: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
37: withRestartList(expr, restarts)
36: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
37: withRestartList(expr, restarts)
38: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))38: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
39:
39: evaluate::evaluate(...)
40: evaluate::evaluate(...)
40: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0Levaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
else 2L }, output_handler = knit_handlers(options$render, options))
41: in_dir(input_dir(), expr)
42: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 41: in_dir(input_dir(), expr)
42: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L43: eng_r(options)
44: block_exec(params)
45: call_block(x)
46: process_group(group)
}, output_handler = knit_handlers(options$render, options)))
43: eng_r(options)
47: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt()44: block_exec(params)
45: call_block(x)
46: process_group(group)
47: if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check())
48: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
49: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
49: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
50: process_file(text, output)
51: 53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53:
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) {55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers) texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) {
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) {59: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/BMIselect.Rcheck/vign_test/BMIselect", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/Rtmpb991po/fileb2025dce7c14.rds")
An irrecoverable exception occurred. R is aborting now ...
thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/BMIselect.Rcheck/vign_test/BMIselect", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/Rtmpb991po/fileb2025dce7c14.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from Introduction.Rmd:164-179 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `apply()`:
! dim(X) must have a positive length
---
Backtrace:
▆
1. └─BMIselect::BMI_LASSO(...)
2. └─base::lapply(...)
3. └─BMIselect (local) FUN(X[[i]], ...)
4. └─base::apply(c$post_pool_beta, 2, function(x) mean(abs(x) <= sqrt(stats::var(x))))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
dim(X) must have a positive length
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64