Package: taxify
Title: Offline Taxonomic Name Matching Against Darwin Core Backbones
Version: 0.7.0
Authors@R: 
    person("Gilles", "Colling", , "gilles.colling051@gmail.com",
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-3070-6066"))
Description: Matches taxonomic names against local copies of published
    backbones ('Catalogue of Life', 'GBIF Backbone Taxonomy', 'ITIS',
    'World Flora Online', 'WoRMS', 'NCBI Taxonomy', 'Open Tree of Life',
    'Euro+Med', 'Species Fungorum', 'AlgaeBase', 'FishBase', 'SeaLifeBase',
    'Reptile Database', 'LCVP', 'WCVP', 'Mammal Diversity Database',
    'AviList', 'LPSN') and two vegetation classifications, and resolves each
    name to its accepted name. It performs the name-resolution step of
    'taxize' and 'WorldFlora', run offline against these files. Names are
    cleaned of authors and qualifiers, matched exactly and then by edit
    distance within their genus, and followed from synonym to accepted name,
    with the backbone version recorded on every row. Published trait, status
    and distribution datasets are joined on the accepted name, and so is a
    table the user supplies. Matching runs in the 'vectra' column-store
    engine.
License: MIT + file LICENSE
URL: https://gillescolling.com/taxify/,
        https://github.com/gcol33/taxify
BugReports: https://github.com/gcol33/taxify/issues
Additional_repositories: https://gcol33.r-universe.dev
Depends: R (>= 4.1.0)
Imports: curl, jsonlite, rlang, vectra (>= 0.14.0)
Suggests: ape, DBI, knitr, openxlsx2, rgbif, rmarkdown, RSQLite, sf,
        taxifydb (>= 0.1.19), terra, testthat (>= 3.0.0), TR8, withr
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Config/roxygen2/version: 8.1.0
NeedsCompilation: no
Packaged: 2026-10-27 13:40:51 UTC; Gilles Colling
Author: Gilles Colling [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-3070-6066>)
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Repository: CRAN
Date/Publication: 2026-10-27 16:00:02 UTC
