6b4ee58f1721db039306693bfafd7ae8 *ChangeLog
d9b04aeac1a22aee76210c9e08c1dc8d *DESCRIPTION
6ad73928755af63bb25467e6317b7fee *NAMESPACE
ef4a82ee4094d4b00524511a2facc1a9 *R/2ld.R
a9b062dba12282dbc9bf5620d1ed615f *R/ACDE.R
7ba3e176eff682dfc57850b6ffc37b15 *R/AE3.R
f9a87585b4f32046da12f42f25e47fe6 *R/BFDP.R
5ae59c42bad4e1eed3ad402921630c70 *R/ESplot.R
cdeecb3b3e4e1b3d735d9ddbfd1cc5b8 *R/FPRP.R
a2ce10b414ce8a5f998ec87a4c350192 *R/KCC.R
ccd6f60c50d184f694b0339d9cf41a1f *R/MCMCgrm.R
d521bcd705f4ed4306dd0cd7459ce8cb *R/METAL_forestplot.R
4770ddafcd1261725f81cd6cd5e755ea *R/SNP.R
1da3186649d51408c1c4fae3d85fd7dc *R/ab.R
f20dc9b056c396108d972901706913fc *R/asplot.R
4c125dbf941e7b366e8c5cbd3f1e7cfc *R/b2r.R
aebf00b0b77487430c8fefc8dbb5b4f0 *R/bt.R
a4f8dabbad53ec2333ba41fc02a89737 *R/ccsize.R
86a1fad9276f7dce8274a46dcd65a4fa *R/chow.test.R
065713eb12dffea00b58441fbf0777be *R/chrs.R
f6a9c44227df9424cc13c89f6a4ddd40 *R/circos.cis.vs.trans.plot.R
91487a23f9fca383d523972a4be8664c *R/circos.cnvplot.R
72b4ca04de241570bd711486ed4de2cb *R/circos.mhtplot.R
b17e899afc15a11fd38210f911cda6c1 *R/circos.mhtplot2.R
69cfce1d6f1c02c53ab8eabffbe80bef *R/cis.vs.trans.classification.R
2c81568b7d0af2f7738b9d4718cba969 *R/cnvplot.R
ce05b36810d04b0b25324013425af4ae *R/comp.score.R
f845e4bafc87c4fa363431beb6cfccce *R/cs.R
546152aa15c1ad264486aada1ef59ee8 *R/fbsize.R
bcd6debde6cfe0c327b0fd29e1ddaddd *R/gap-internal.R
005c5da50496363b3bdf218829ab8093 *R/gap.R
8a8f21dd16a1551a268385a24a5b2b35 *R/gc.em.R
7da45b8afaef0d5bdc1f251f30c8b97f *R/gc.lambda.R
9243e2b28ed4aa203c856e5cff84d3ef *R/gcontrol.R
3710c87e84e4e94442f4ce84d40346bf *R/gcontrol2.R
0fdb96a5029416c0e572957f4e36943a *R/gcp.R
5d75ffc13fbb71ad258a55e515ae52f7 *R/genecounting.R
3183963673d7954e452f8c3b41766e32 *R/get_b_se.R
ecebe21154b5ae7fa333b81da8c36f59 *R/get_pve_se.R
a1bacbbb522fcfd462814999494d06ef *R/get_sdy.R
d662ad15be550935e29f9c1076d6995b *R/gif.R
6d91d0a9ccbb85be4e897674c633ff23 *R/h2.jags.R
6860c5e6098d5d0c0f5b5dfd9f66be3f *R/h2G.R
47055c3a34d1a9669eea1229d600cb69 *R/h2GE.R
da1dc188abe683cad59015f5a99c7db4 *R/h2_mzdz.R
688afb1079153b30a37f1e4af9c8ec16 *R/h2l.R
ed6d8b75bcd49c42ef7fc03cbf50f968 *R/hap.R
4f3d0a43319fb322f7be349ad24a974e *R/hap.control.R
93512aed47b540b024befacbcaef7cbd *R/hap.em.R
ddf6c8585aba00e044c5e963fa4c5a14 *R/hap.score.R
c9f7a243d011faeb930948b56feb3046 *R/hapfun.R
ef5418f37b0ffe0c0ab4ab7d581755a7 *R/htr.R
09563d039e0488fbccce81e02a5d5066 *R/hwe.R
35b2d79888e18178d44306ee6e55021b *R/hwe.cc.R
84613092cf17f3501ad8896b6f56d764 *R/hwe.hardy.R
5c693453ec06e6ed0963b9aca13b171a *R/hwe.jags.R
ff9c7aa41201e541906ebc7eaefcfedf *R/invnormal.R
97b2ff2d24bdaf49f8d8ac26a4750b81 *R/kin.morgan.R
e2fbdd4fc2e55c648493f826befa164b *R/labelManhattan.R
89e345ba0656ef8a72e416ea3c313ca5 *R/log10p.R
30786343d55f2412e868249935ad8b82 *R/log10pvalue.R
ac76d649108d06ad052a3278faff9ec9 *R/logp.R
a12fbb4bf91f997de67a226d2c285df9 *R/makeRLEplots.R
91c6b0871505c167027e07e627eb1531 *R/makeped.R
37421a37eaf62d85f91697a91bcfc59a *R/masize.R
7f254f3ecfb8fcb54aa8fc5572d99927 *R/metap.R
03475a2c5418f46f2e1f333400e03be0 *R/metareg.R
96ebee1f8a5036ea90fe581eab4ea0d3 *R/mhtplot.R
65c7481e47813d1ca687b02bbe78d658 *R/mhtplot.trunc.R
07a9681cf003a6443d2bab5c6e3b8683 *R/mhtplot2.R
e06c07785cd08e83aade48cfa3641d55 *R/mia.R
558b7211487914e034d32199dad0f8c5 *R/miamiplot.R
8fee619f3274858b62839016cb907db9 *R/miamiplot2.R
384c7013c9fbc8ae18f6d066482ffed7 *R/mr.R
bd182d8719ce3ef531366ccfac329987 *R/mr_forestplot.R
f3f6fa7a8c98b5104c78243d4e533f8c *R/mtdt.R
7bce3ef66e8d9a8e20ad4c42e768609d *R/mtdt2.R
8ef8c25eaa57328f95dec3545ecab4c3 *R/muvar.R
429beb0ff4e3306a786cc512d3126c73 *R/mvmeta.R
755ee00942f82d05d97bef3b8aef7d72 *R/onload.R
140ba1b82a3ba819bc54dcfa7bf1a6d9 *R/pbsize.R
48ffcbc43fc7bbd031732fe8c84b46dd *R/pbsize2.R
fe53887ecfa807bdc337913cb175765a *R/pedtodot.R
5b5bccf720e28e033f8c2cd21c4a872c *R/pedtodot_verbatim.R
c23c69f9a16ea590cafcda3ca2514856 *R/pfc.R
f33c3a1b104f627d4a000cf995eab9ed *R/pfc.sim.R
4f2d7536c792f14b3d7e27ea1bc6c93f *R/pgc.R
2d4ddab0bbe4e5dbaa35a6d4329c1689 *R/pvalue.R
4074c94d2aedb75a5d7fcbc7dc1985cd *R/qqfun.R
e30712362271fae79be2dbc7dbc60174 *R/qqunif.R
c0acd0e7632708a8cc6e24d8701268f4 *R/qtl2dplot.R
be2ed7be190ab4b63c5cfcaa68f00aea *R/qtl2dplotly.R
edee66fb3a99d14a9ade030530e7dd28 *R/qtl3dplotly.R
6e6c806e33351f5375500e688d18aa79 *R/qtlClassifier.R
8c6f6c2dc4e9da463e222c4c55b793bf *R/qtlFinder.R
69bae09f30be48e755bdcd84d35710aa *R/read.ms.output.R
e62b9668d1937b03889ede1600b2e1af *R/revStrand.R
ba21f2ba3d23c7fabefca111d84284aa *R/runshinygap.R
ce47c4556f4a80679964db346d25bfaf *R/s2k.R
a6757da746a319d2aff3b04581eeefee *R/sentinels.R
3d50e8005a96eb41947031249ece0c15 *R/snpid.R
efe50903792c312706e6f5f7902d395d *R/snptest_sample.R
6d182792a8e0ac2b5027b2f59dcb454a *R/tscc.R
c84a06ab252396955fc12d5c9823b0f0 *R/utils.R
1105a57e3ebd5b8264925ed5aa551c65 *R/whscore.R
cd0b36e0ea4fad8b94ddc23578590bad *build/partial.rdb
fc1cc236f616a0b53f8c4d7b2bd6c13b *build/vignette.rds
2d62a49c590367ac4cc50c3bc8135599 *data/datalist
c9875ab5a648dbb2e8bc671e86f8e6c6 *data/hg18.rda
5f1f9cec86f6a29c4fc6204c77db2bb7 *data/hg19.rda
7849aa6307c0f3e23bf9859dee52b570 *data/hg38.rda
a4472a8987aca674719357576b31a2ca *demo/00Index
4095074268593d0955e7fd82e87aa707 *demo/gap.R
38b67eb50740c891eb5b2f88c534ffaf *inst/CITATION
3952b1ea1a1ec44fd64b45e1782dfdf9 *inst/JAGS/h2.jags
51f663a162ce7a07c070c7b919736c91 *inst/JAGS/hwe.jags
1b8d4c5789834ac3c97fe5be55071b21 *inst/README.md
ca8c539268a95539cb946212d8ce234f *inst/REFERENCES.bib
bf77e45cc229bee8f98cd37342d62a1c *inst/doc/gap.R
ee66496f164e900ef03b799566d30fca *inst/doc/gap.Rmd
b891783b0051cb04f214ec8f20a866e2 *inst/doc/gap.html
900be081671eb090f333bf463f2a6718 *inst/doc/shinygap.Rmd
4c3e6311c4d1499a091d5ac782000bd4 *inst/doc/shinygap.html
84f48cc3976e173c7ff29b76f0c673dc *inst/ms/clms
5ae1af1445c95f5e9718070f277a7259 *inst/ms/ms.c
eafafa8fa89edef1f0bcaffa3acf26b0 *inst/ms/ms.h
215af301f356657fc5c4f1c6e5406769 *inst/ms/msdoc.txt
94d884d9da58ce8d37a4ec52a8780304 *inst/ms/rand1.c
ee8b64743432b4cdeb7ddd6c496ba831 *inst/ms/rand2.c
a8d9ded6ad8411ef1b262993eafd0a45 *inst/ms/streec.c
0ca0416e620b9183609fcfe0abd00a38 *inst/ms/www
d8d6ff07b786683ff3b7876604b33014 *inst/nature-genetics.csl
915db281556d163396dc23729821a30c *inst/scripts/GRCh.R
fbf57f860a9e17f390ddd25ae2605b22 *inst/scripts/pedtodot.sh
02a68b5bfca3afe57075bc060b9d254c *inst/shinygap/DESCRIPTION
4cc076ed4c3f756b4bbcdca678fdc417 *inst/shinygap/R/global.R
0c95cd40a8537b43bad28e81f9db18ff *inst/shinygap/README.md
c28d3093581243bda6483b701e46863a *inst/shinygap/rsconnect/shinyapps.io/jinghuazhao/shinygap.dcf
3412672f58e8e7dbd98c1d6e7ca44b96 *inst/shinygap/server.R
86e78a2452ed84feb833cde784bff38b *inst/shinygap/ui.R
a5a3ac6bbace1b9da8cee6b52c5276a4 *man/ACDE.Rd
88b4661bb86289d4fd2f7f72d327ed6d *man/ACE_CI.Rd
f6eaeeb0fdc50e8b2a97e7dd7f96867e *man/AE3.Rd
b20eb33172e0be59bbaf59e0f996c7b8 *man/BFDP.Rd
7393e558b87893702d78fc0529b13d1f *man/ESplot.Rd
ec9e86a3d7801bcd3f0e4b43b8d2fab4 *man/FPRP.Rd
beb7ada4136e5bb31f622a44eea9d744 *man/KCC.Rd
082e67e66b4ee92fa1784d915b725df9 *man/LD22.Rd
968dc1caddb43447e482ada0ec0726a6 *man/LDkl.Rd
60c00e8550ea61790bc04c16be7812b7 *man/MCMCgrm.Rd
6ebe2f432a6be681995d29c8e5f83fae *man/METAL_forestplot.Rd
346750ff9e7bb40937ba533e11267fb1 *man/ReadGRM.Rd
25e78855715e91981b6440ce543462f3 *man/ReadGRMBin.Rd
5a7236ab96fb3941d5b08eebfb7c7415 *man/SNP.Rd
ff9d39bd6f7ddc40573271e0df87a246 *man/WriteGRM.Rd
c8169f965bd5f9267eb0a69fb2b66c13 *man/WriteGRMBin.Rd
1dfbc575b39fd7c74a05415dbe2acec2 *man/a2g.Rd
4140027c2f3bc8cfe6e0ded67be33f33 *man/ab.Rd
dfbd237a2b70da2dec2ee3404b2c2672 *man/allele.recode.Rd
345c8f8a476659e0200218ef08ff2754 *man/asplot.Rd
b64fe3903d48c1fcdb412f225aea77e8 *man/b2r.Rd
2ea974ace274a73b9291855e201f4fb8 *man/bt.Rd
703ae1576bf87c6def88898633f28e61 *man/ccsize.Rd
19231e825b07c05255d4e41aa92952bb *man/chow.test.Rd
1fbf2ee39b67901b5e98ccf798bea742 *man/chr_pos_a1_a2.Rd
926eac506b6d20d8ae10224da0c10631 *man/ci2ms.Rd
b441a418cca0b9dd301c815a8f460208 *man/circos.cis.vs.trans.plot.Rd
cb82a18ecec8544b4ba946e4f8d98c6e *man/circos.cnvplot.Rd
359681017226c93f352117c8873dc13e *man/circos.mhtplot.Rd
71c9a2042ceb7d8a0874fb4a47c79098 *man/circos.mhtplot2.Rd
739b8c3d3ce3c00f3cb5af07103c6abb *man/cis.vs.trans.classification.Rd
411948a3651b5392fd99bc3c7b2ba9a9 *man/cnvplot.Rd
2f7be7efe580c084bdb335e513212b0e *man/comp.score.Rd
b869cec6242d5a82c1f9af240f605538 *man/cs.Rd
b2d7db59dda65fea689246541b27e6ee *man/fbsize.Rd
9c78d6290895ffd48978d56cf227b73d *man/g2a.Rd
64817cfc5ea73103d9329dd643385d0b *man/gap.Rd
54159e62780e7024ec5a9873b1e9d82c *man/gc.em.Rd
563d7c2ae4c901db647baf67ea51f080 *man/gc.lambda.Rd
db6d12b395bf0fe4d9ef2aaa37798ae5 *man/gcontrol.Rd
feec6eb21ddf34e95ff77ff0b6828088 *man/gcontrol2.Rd
d2240c44f48394ead99c997ffaf44c84 *man/gcp.Rd
f37c2524fad14a91ec5b076a4b883fb6 *man/genecounting.Rd
3f6e9f40a99dbc81e2a19cae9168c5e9 *man/geno.recode.Rd
8ace9ecd9945153aed59759012620e97 *man/get_b_se.Rd
ff869f7c61971ed766016589737e1fb3 *man/get_pve_se.Rd
93925d9c9e218d157d4922c48216ad6a *man/get_sdy.Rd
54eaea1644659af27c8f6acfc77a6dd4 *man/gif.Rd
548ae43c88648e539bb59ffcf7ba14ff *man/grid2d.Rd
34052395309dbd5bf9a1c8ebcada994f *man/h2.jags.Rd
9c297590219fd4cdce062e35f142d033 *man/h2G.Rd
9e08b9b8605106c17d42d70e26b4fc60 *man/h2GE.Rd
dc6fbc10a726735f618eed0cf39ee51a *man/h2_mzdz.Rd
51584736806a09deb3bd19f99863996e *man/h2l.Rd
e864d6a911ad6a152dfb3f82b61ecb10 *man/hap.Rd
550d1379e2105d88c62449c79bfa4aa7 *man/hap.control.Rd
dc83956e09baa1b0e5ed392a0bb9d4c6 *man/hap.em.Rd
59d395e27875e45b7c38141781e1dfdd *man/hap.score.Rd
f71f97d5c75847e250166de5e4ca8183 *man/hg18.Rd
b1a018655ba9d9d5281fbe44d9c1184d *man/hg19.Rd
5bee151ad9174a5531775a00001d1a04 *man/hg38.Rd
0f0891d8e12a0c3d0e78b30fe147a78c *man/hmht.control.Rd
d9778f90bb9194aca08bf0321aedd693 *man/htr.Rd
d1b7a7ab63dca91d4b478bdb46e77d6f *man/hwe.Rd
65067780c20bb1abf100a13fe64d11aa *man/hwe.cc.Rd
9f070fa7b556362e3a030502bdac4593 *man/hwe.hardy.Rd
7a34d619f1de08b1142aad8d97c17a8a *man/hwe.jags.Rd
39b48faa5088265c07389681425f6082 *man/inv_chr_pos_a1_a2.Rd
e339d1710450603507d47bf227d99c21 *man/invnormal.Rd
c809809f6cce4f230e748901846defd5 *man/ixy.Rd
5c123b8c959ec4ad939143f1106aedf9 *man/kin.morgan.Rd
d5c7e3dd0641766139c6b6143f0b9011 *man/klem.Rd
1356f6457e1eb99747ce3103bcf49549 *man/labelManhattan.Rd
6a31fb9903adca7408e3a43bd14f6d5e *man/log10p.Rd
4b71baa9d385a2caa5f49efbafc4058b *man/log10pvalue.Rd
a3aec09c0ced82025717338d2de288aa *man/logp.Rd
b899f808d5e83968c07271a81b30fcb8 *man/makeRLEplot.Rd
142848b64d7392fc6170eb58ddd192ae *man/makeped.Rd
0a20fb983a03335fa6dca0b0c923a11d *man/masize.Rd
7c6f6249d7e9a85afb19a2d454e2c8c8 *man/metap.Rd
f1b273c5ce33c6c249c10daa409af821 *man/metareg.Rd
e48e2d99f578fdd8c1099d4f00cbe646 *man/mht.control.Rd
a12a521aa25bc3d7636d432b632c92aa *man/mhtplot.Rd
e6992e8cc650c83d34084362d32c7bcc *man/mhtplot.trunc.Rd
e6762be6a6e2cf975cc96fd8d3efa2b6 *man/mhtplot2.Rd
92b9a04c9bb372b4ee580e96c6254cff *man/mia.Rd
3e6f95b55641c98c5fd53eca522b23de *man/miamiplot.Rd
1ea78e0b696834fb3e779316032574aa *man/miamiplot2.Rd
029ac90f29cc36f387b32357ccac1950 *man/mr.Rd
b6256f93adb741d40b577b5c5f3da4c8 *man/mr_forestplot.Rd
0e6c9e1cc9431fd08f2cca65ff503df5 *man/mtdt.Rd
2abe79e97e4061cb47596208719978ee *man/mtdt2.Rd
a2b846cc744b75e6514095b8027000b4 *man/muvar.Rd
afd6da282988160abcd766ddddd0a9cd *man/mvmeta.Rd
46fc79ceff13bc0347667a0f91ccf017 *man/pbsize.Rd
b11f886d67755950ccc5f10b18507d33 *man/pbsize2.Rd
dfc30b199f271114773a0b60ea83d8ee *man/pedtodot.Rd
6332e9d005a1aca1e8426de44022df39 *man/pedtodot_verbatim.Rd
551cb7f5421e4cdf41f3dc95ec5db759 *man/pfc.Rd
963612e7f77d8124597e06dd659b71fd *man/pfc.sim.Rd
7112bb63418b542d5644197a5e9394a7 *man/pgc.Rd
fd93d9e0403214b4ddd3d3b2e878c76f *man/plot.hap.score.Rd
a0b0670658aa312eb5ef730041aed5a4 *man/print.hap.score.Rd
d4b6796e874d20edc2cb080d1ddad5fd *man/pvalue.Rd
6efe33cf2a36b42f07fe799cd7a2119c *man/qqfun.Rd
c2b23b9d06ef20b87d94982b6184d1fc *man/qqunif.Rd
0012d58b9adce70e953041d2be750c73 *man/qtl2dplot.Rd
4b870f148742613d340ef19ae0c9c45c *man/qtl2dplotly.Rd
116fe0edfec682e7cb7882444bc0621c *man/qtl3dplotly.Rd
7a42b92e62a05a259166f5309ab82c13 *man/qtlClassifier.Rd
4b7c78feb553a0b08f65e56f2369f42a *man/qtlFinder.Rd
692aaff07e0273bb063934403b4778f4 *man/read.ms.output.Rd
9be2133cefc286aa25b5ee29d46e9d4d *man/revStrand.Rd
2d140e3282bf51d7deeddc95717271f4 *man/runshinygap.Rd
c916adff8214edc4dad07fc2da27bd69 *man/s2k.Rd
98c3a8935c7af77516e87f33b4ea3e1d *man/sentinels.Rd
22dff769dabbefc566480417eca30aff *man/snptest_sample.Rd
ffc715fa45f520fe9b4bdcf4e176a2c0 *man/tscc.Rd
c107a39e740952be4ec7c2c0c8cccc0f *man/whscore.Rd
08aa1435ac2863a8a4266b7e9687b9f3 *man/xy.Rd
6a3db0aa3ec9141f9d06dc88ce14b82b *src/2k.c
4baa5060a6c3a8aa29032cf7a0d459e8 *src/2ld.c
05937c1a3c35fb75d582fd6cd4178c39 *src/cline.c
dd47033074934e7488c53a721e9a3e9d *src/cline.h
e47416ab52a7aed06797e84d41e9b959 *src/gcontrol_c.c
c5852c4dcca45dfe10e159334df09454 *src/gcx.c
ab6503b4c67fe81dcee4ffe75fc9815c *src/gdef.h
b3d4ed51f3df96442253235f9c349aec *src/gif_c.c
4414de93ee4f5417f48888631caca1f1 *src/hap.h
4b53a7f06faef08ac8564b4179401a7e *src/hap_c.c
ff600070cd93e88d7f4993078d5b706d *src/hwe.hardy.c
2b8ee2944db68a75db38bc7d1c1f1b36 *src/ignore.h
f584cc599b685b497647f80fedcf84c3 *src/kin.morgan.c
b86806249406f1a6ad3642d6b70679d6 *src/makeped_c.c
15f87bd40169dd3d4c7208a873025c77 *src/mia.c
90e1185baab2434a855abdce1dd65861 *src/muvar.c
f65818e0b5ee4be5c83fa8e7048a99f6 *src/nghds.h
f6035fa6806288a5c68f29d69f4f8ca2 *src/package_native_routine_registration_skeleton.c
538f8e185dec6c2211039bafacec5846 *src/pfc.f
33243a654fe6c2e19dca2a4ff41b3ae0 *src/pfc.sim.f
168d2990f78f643e5d39cfbe15011551 *src/pgc.h
bd7b163f55c84a709ec468f94e31242f *src/pgc_c.c
d56a95e439a688ddfc520deeeb12ed6a *src/whscore.c
b6864e5dff47a59a0aa7d2c4cfbac916 *tests/testthat.R
08c60ca4765bf9263a940bb8657062fa *tests/testthat/test-pbsize2.R
ee66496f164e900ef03b799566d30fca *vignettes/gap.Rmd
900be081671eb090f333bf463f2a6718 *vignettes/shinygap.Rmd
