+ cd /Users/pd/r-devel + umask 022 + cd R + svn up --accept theirs-full Updating '.': At revision 86902. + tools/rsync-recommended receiving file list ... done sent 126 bytes received 741 bytes 1734.00 bytes/sec total size is 14186725 speedup is 16363.00 Creating links + curl -f http://journal.r-project.org/archive/RJournal.bib % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 251k 100 251k 0 0 1266k 0 --:--:-- --:--:-- --:--:-- 1263k + mv ttt share/texmf/bibtex/bib/RJournal.bib + cd .. + rm -rf BUILD-dist + mkdir BUILD-dist + cd R + aclocal -I m4 + autoconf + cd ../BUILD-dist + cp ../config.site . + ../R/configure --enable-maintainer-mode checking build system type... x86_64-apple-darwin21.6.0 checking host system type... x86_64-apple-darwin21.6.0 loading site script '../R/config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... no checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /usr/bin/tar checking for tex... /Library/TeX/texbin/tex checking for pdftex... /Library/TeX/texbin/pdftex checking for pdflatex... /Library/TeX/texbin/pdflatex checking for makeindex... /Library/TeX/texbin/makeindex checking for texi2any... /opt/R/x86_64/bin/texi2any checking whether texi2any version is at least 6.1... yes checking for ginstall-info... no checking for install-info... /opt/R/x86_64/bin/install-info checking for texi2dvi... /opt/R/x86_64/bin/texi2dvi checking for kpsewhich... /Library/TeX/texbin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 checking for xdg-open... no checking for firefox... no checking for mozilla... no checking for epiphany... no checking for galeon... no checking for opera... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... /usr/bin/open using default browser ... /usr/bin/open checking for xdg-open... no checking for acroread... no checking for acroread4... no checking for evince... no checking for atril... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... /usr/bin/open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... /opt/local/bin/notangle checking for realpath... false checking for pkg-config... /opt/R/x86_64/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking for gfortran... gfortran checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... -std=gnu++11 checking whether g++ -std=gnu++11 -g -O2 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether __attribute__((visibility())) is supported... no checking whether gcc accepts -fvisibility... yes checking whether g++ -std=gnu++11 accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether the compiler supports GNU Objective C... yes checking whether gcc accepts -g... yes checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu23 is a C23 compiler... no checking whether gcc -std=gnu2x is a C23 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 786432 checking how to convert x86_64-apple-darwin21.6.0 file names to x86_64-apple-darwin21.6.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin21.6.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for ld used by g++ -std=gnu++11... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the g++ -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for g++ -std=gnu++11 option to produce PIC... -fno-common -DPIC checking if g++ -std=gnu++11 PIC flag -fno-common -DPIC works... yes checking if g++ -std=gnu++11 static flag -static works... no checking if g++ -std=gnu++11 supports -c -o file.o... yes checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... no checking for main in -lncurses... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... no checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... no checking for features.h... no checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for egrep -e... (cached) /usr/bin/grep -E checking for GNU C library with version >= 2... no checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... unsupported checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/local/lib -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0/../../.. -lgfortran -lquadmath checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -lto_library -L/usr/local/lib -lSystem /Library/Developer/CommandLineTools/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.osx.a checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ -std=gnu++11 accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... yes, using $(OBJC) -MM checking for ObjC runtime library... checking whether gcc accepts -fobjc-exceptions... yes checking for cached Foundation settings... no checking whether default Foundation framework works... no checking whether -framework Foundation works... yes checking for working Foundation implementation... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether linker supports dynamic lookup... yes checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking whether g++ supports C++23 features with -std=gnu++23... no checking whether g++ supports C++23 features with -std=gnu++2b... yes checking whether g++ -std=gnu++17 can compile ObjC++... yes checking for Objective C++ compiler... g++ -std=gnu++17 checking for g++ -std=gnu++17 option to support OpenMP... unsupported checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... no checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... yes checking for __sinpi... yes checking for __tanpi... yes checking for fseeko... yes checking for ftello... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... no checking whether sched_getaffinity exists and is declared... no checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... no checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... no checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for stpcpy... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... no checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -llapack... no checking for ATLAS routines in liblapack... no checking for dpstrf_ in -llapack... yes checking for liblapack dependency with both BLAS and LAPACK routines... no checking if LAPACK version >= 3.9.0... 3.2.1, so no configure: using internal LAPACK sources checking for iconv.h... yes checking for iconv... in libiconv checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for ucol_open in -licucore... yes checking for X... libraries /usr/X11/lib, headers /usr/X11/include checking whether -R must be followed by a space... neither works checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes configure: using static pangocairo checking whether cairo including pango is >= 1.2 and works... yes checking for CFStringGetSystemEncoding in CoreFoundation framework... -framework CoreFoundation checking for /opt/R/x86_64/lib/tclConfig.sh... /opt/R/x86_64/lib/tclConfig.sh checking for /opt/R/x86_64/lib/tkConfig.sh... /opt/R/x86_64/lib/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR library... no checking for XDR support... no checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for libdeflate.h... no checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 8.4.0 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... no checking for struct stat.st_atimespec.tv_nsec... yes checking for setitimer... yes checking for gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... yes checking for lpr... lpr checking for paperconf... false checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... mkdir -p checking whether we are using the GNU C Library 2 or newer... no checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for shared library run path origin... done checking whether imported symbols can be declared weak... no checking for multithread API to use... none checking for argz.h... no checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) no checking for munmap... yes checking for stpcpy... (cached) yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... no checking for argz_stringify... no checking for argz_next... no checking for __fsetlocking... no checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... no checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... no checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... no checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... yes checking for CFLocaleCopyCurrent... yes checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) yes checking for CFLocaleCopyCurrent... (cached) yes checking whether included gettext is requested... no checking for GNU gettext in libc... no checking for GNU gettext in libintl... no checking whether to use NLS... yes checking where the gettext function comes from... included intl directory Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... no using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: --with-libdeflate-compression requires libdeflate R is now configured for x86_64-apple-darwin21.6.0 Source directory: ../R Installation directory: /usr/local C compiler: gcc -g -O2 Fortran fixed-form compiler: gfortran -g -O2 Default C++ compiler: g++ -std=gnu++17 -g -O2 C++11 compiler: g++ -std=gnu++11 -g -O2 C++14 compiler: g++ -std=gnu++14 -g -O2 C++17 compiler: g++ -std=gnu++17 -g -O2 C++20 compiler: g++ -std=gnu++20 -g -O2 C++23 compiler: g++ -std=gnu++2b -g -O2 Fortran free-form compiler: gfortran -g -O2 Obj-C compiler: gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, aqua, tcltk External libraries: pcre2, readline, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared BLAS, R profiling, maintainer mode Capabilities skipped: Options not enabled: memory profiling Recommended packages: yes + rm ../R/src/main/gram.c + rm ../R/src/library/tools/src/gramRd.c ../R/src/library/tools/src/gramLatex.c + make -j4 running CONFIG_SHELL=/bin/sh /bin/sh ../R/configure --enable-maintainer-mode --no-create --no-recursion checking build system type... x86_64-apple-darwin21.6.0 checking host system type... x86_64-apple-darwin21.6.0 loading site script '../R/config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... no checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /usr/bin/tar checking for tex... /Library/TeX/texbin/tex checking for pdftex... /Library/TeX/texbin/pdftex checking for pdflatex... /Library/TeX/texbin/pdflatex checking for makeindex... /Library/TeX/texbin/makeindex checking for texi2any... /opt/R/x86_64/bin/texi2any checking whether texi2any version is at least 6.1... yes checking for ginstall-info... no checking for install-info... /opt/R/x86_64/bin/install-info checking for texi2dvi... /opt/R/x86_64/bin/texi2dvi checking for kpsewhich... /Library/TeX/texbin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 checking for xdg-open... no checking for firefox... no checking for mozilla... no checking for epiphany... no checking for galeon... no checking for opera... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... /usr/bin/open using default browser ... /usr/bin/open checking for xdg-open... no checking for acroread... no checking for acroread4... no checking for evince... no checking for atril... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... /usr/bin/open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... /opt/local/bin/notangle checking for realpath... false checking for pkg-config... /opt/R/x86_64/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking for gfortran... gfortran checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... -std=gnu++11 checking whether g++ -std=gnu++11 -g -O2 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether __attribute__((visibility())) is supported... no checking whether gcc accepts -fvisibility... yes checking whether g++ -std=gnu++11 accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether the compiler supports GNU Objective C... yes checking whether gcc accepts -g... yes checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu23 is a C23 compiler... no checking whether gcc -std=gnu2x is a C23 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 786432 checking how to convert x86_64-apple-darwin21.6.0 file names to x86_64-apple-darwin21.6.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin21.6.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for ld used by g++ -std=gnu++11... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the g++ -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for g++ -std=gnu++11 option to produce PIC... -fno-common -DPIC checking if g++ -std=gnu++11 PIC flag -fno-common -DPIC works... yes checking if g++ -std=gnu++11 static flag -static works... no checking if g++ -std=gnu++11 supports -c -o file.o... yes checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... no checking for main in -lncurses... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... no checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... no checking for features.h... no checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for egrep -e... (cached) /usr/bin/grep -E checking for GNU C library with version >= 2... no checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... unsupported checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/local/lib -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0/../../.. -lgfortran -lquadmath checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -lto_library -L/usr/local/lib -lSystem /Library/Developer/CommandLineTools/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.osx.a checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ -std=gnu++11 accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... yes, using $(OBJC) -MM checking for ObjC runtime library... checking whether gcc accepts -fobjc-exceptions... yes checking for cached Foundation settings... no checking whether default Foundation framework works... no checking whether -framework Foundation works... yes checking for working Foundation implementation... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether linker supports dynamic lookup... yes checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking whether g++ supports C++23 features with -std=gnu++23... no checking whether g++ supports C++23 features with -std=gnu++2b... yes checking whether g++ -std=gnu++17 can compile ObjC++... yes checking for Objective C++ compiler... g++ -std=gnu++17 checking for g++ -std=gnu++17 option to support OpenMP... unsupported checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... no checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... yes checking for __sinpi... yes checking for __tanpi... yes checking for fseeko... yes checking for ftello... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... no checking whether sched_getaffinity exists and is declared... no checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... no checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... no checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for stpcpy... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... no checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -llapack... no checking for ATLAS routines in liblapack... no checking for dpstrf_ in -llapack... yes checking for liblapack dependency with both BLAS and LAPACK routines... no checking if LAPACK version >= 3.9.0... 3.2.1, so no configure: using internal LAPACK sources checking for iconv.h... yes checking for iconv... in libiconv checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for ucol_open in -licucore... yes checking for X... libraries /usr/X11/lib, headers /usr/X11/include checking whether -R must be followed by a space... neither works checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes configure: using static pangocairo checking whether cairo including pango is >= 1.2 and works... yes checking for CFStringGetSystemEncoding in CoreFoundation framework... -framework CoreFoundation checking for /opt/R/x86_64/lib/tclConfig.sh... /opt/R/x86_64/lib/tclConfig.sh checking for /opt/R/x86_64/lib/tkConfig.sh... /opt/R/x86_64/lib/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR library... no checking for XDR support... no checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for libdeflate.h... no checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 8.4.0 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... no checking for struct stat.st_atimespec.tv_nsec... yes checking for setitimer... yes checking for gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... yes checking for lpr... lpr checking for paperconf... false checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... mkdir -p checking whether we are using the GNU C Library 2 or newer... no checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for shared library run path origin... done checking whether imported symbols can be declared weak... no checking for multithread API to use... none checking for argz.h... no checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) no checking for munmap... yes checking for stpcpy... (cached) yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... no checking for argz_stringify... no checking for argz_next... no checking for __fsetlocking... no checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... no checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... no checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... no checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... yes checking for CFLocaleCopyCurrent... yes checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) yes checking for CFLocaleCopyCurrent... (cached) yes checking whether included gettext is requested... no checking for GNU gettext in libc... no checking for GNU gettext in libintl... no checking whether to use NLS... yes checking where the gettext function comes from... included intl directory Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... no using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status configure: WARNING: --with-libdeflate-compression requires libdeflate R is now configured for x86_64-apple-darwin21.6.0 Source directory: ../R Installation directory: /usr/local C compiler: gcc -g -O2 Fortran fixed-form compiler: gfortran -g -O2 Default C++ compiler: g++ -std=gnu++17 -g -O2 C++11 compiler: g++ -std=gnu++11 -g -O2 C++14 compiler: g++ -std=gnu++14 -g -O2 C++17 compiler: g++ -std=gnu++17 -g -O2 C++20 compiler: g++ -std=gnu++20 -g -O2 C++23 compiler: g++ -std=gnu++2b -g -O2 Fortran free-form compiler: gfortran -g -O2 Obj-C compiler: gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, aqua, tcltk External libraries: pcre2, readline, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared BLAS, R profiling, maintainer mode Capabilities skipped: Options not enabled: memory profiling Recommended packages: yes config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/manual/Makefile creating RESOURCES creating FAQ creating doc/html/resources.html config.status: creating m4/Makefile make[1]: Nothing to be done for `R'. config.status: creating tools/Makefile make[1]: Nothing to be done for `R'. config.status: creating doc/Makefile config.status: creating doc/html/Makefile make[2]: Nothing to be done for `R'. config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/javaconf config.status: creating etc/Renviron config.status: creating etc/ldpaths config.status: creating share/Makefile mkdir ../share/R mkdir ../share/dictionaries mkdir ../share/encodings mkdir ../share/java mkdir ../share/licenses mkdir ../share/make mkdir ../share/Rd mkdir ../share/Rd/macros mkdir ../share/sh mkdir ../share/texmf mkdir ../share/texmf/bibtex mkdir ../share/texmf/bibtex/bib mkdir ../share/texmf/bibtex/bst mkdir ../share/texmf/tex mkdir ../share/texmf/tex/latex config.status: creating src/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/scripts/R.sh creating src/scripts/R.fe mkdir ../../bin config.status: creating src/include/Makefile mkdir ../../include config.status: creating src/include/Rmath.h0 config.status: creating src/include/config.h config.status: src/include/config.h is unchanged config.status: creating src/include/R_ext/Makefile mkdir ../../../include/R_ext config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile gfortran -fPIC -g -O2 -c ../../../../R/src/extra/blas/blas.f -o blas.o config.status: creating src/extra/xdr/Makefile config.status: creating src/extra/tre/Makefile making xdr.d from ../../../../R/src/extra/xdr/xdr.c making regcomp.d from ../../../../R/src/extra/tre/regcomp.c making xdr_float.d from ../../../../R/src/extra/xdr/xdr_float.c making regerror.d from ../../../../R/src/extra/tre/regerror.c making bindtextdom.d from ../../../../R/src/extra/intl/bindtextdom.c making xdr_mem.d from ../../../../R/src/extra/xdr/xdr_mem.c making regexec.d from ../../../../R/src/extra/tre/regexec.c making dcgettext.d from ../../../../R/src/extra/intl/dcgettext.c making xdr_stdio.d from ../../../../R/src/extra/xdr/xdr_stdio.c making tre-ast.d from ../../../../R/src/extra/tre/tre-ast.c making dgettext.d from ../../../../R/src/extra/intl/dgettext.c making tre-compile.d from ../../../../R/src/extra/tre/tre-compile.c gcc -I../../../../R/src/extra/xdr -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/xdr/xdr.c -o xdr.o making gettext.d from ../../../../R/src/extra/intl/gettext.c making finddomain.d from ../../../../R/src/extra/intl/finddomain.c gcc -I../../../../R/src/extra/xdr -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/xdr/xdr_float.c -o xdr_float.o making tre-match-approx.d from ../../../../R/src/extra/tre/tre-match-approx.c making loadmsgcat.d from ../../../../R/src/extra/intl/loadmsgcat.c gcc -I../../../../R/src/extra/xdr -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/xdr/xdr_mem.c -o xdr_mem.o making tre-match-backtrack.d from ../../../../R/src/extra/tre/tre-match-backtrack.c making textdomain.d from ../../../../R/src/extra/intl/textdomain.c gcc -I../../../../R/src/extra/xdr -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/xdr/xdr_stdio.c -o xdr_stdio.o making tre-match-parallel.d from ../../../../R/src/extra/tre/tre-match-parallel.c making l10nflist.d from ../../../../R/src/extra/intl/l10nflist.c making tre-mem.d from ../../../../R/src/extra/tre/tre-mem.c ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o making explodename.d from ../../../../R/src/extra/intl/explodename.c making tre-parse.d from ../../../../R/src/extra/tre/tre-parse.c ranlib libxdr.a gfortran -fPIC -g -O2 -c ../../../../R/src/extra/blas/blas2.f90 -o blas2.o making dcigettext.d from ../../../../R/src/extra/intl/dcigettext.c making tre-stack.d from ../../../../R/src/extra/tre/tre-stack.c making dcngettext.d from ../../../../R/src/extra/intl/dcngettext.c gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/regcomp.c -o regcomp.o making dngettext.d from ../../../../R/src/extra/intl/dngettext.c making ngettext.d from ../../../../R/src/extra/intl/ngettext.c gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/regerror.c -o regerror.o making plural.d from ../../../../R/src/extra/intl/plural.c gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/regexec.c -o regexec.o making plural-exp.d from ../../../../R/src/extra/intl/plural-exp.c making langprefs.d from ../../../../R/src/extra/intl/langprefs.c gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-ast.c -o tre-ast.o making localcharset.d from ../../../../R/src/extra/intl/localcharset.c config.status: creating src/extra/tzone/Makefile making localename.d from ../../../../R/src/extra/intl/localename.c gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-compile.c -o tre-compile.o making localtime.d from ../../../../R/src/extra/tzone/localtime.c making printf.d from ../../../../R/src/extra/intl/printf.c making strftime.d from ../../../../R/src/extra/tzone/strftime.c making osdep.d from ../../../../R/src/extra/intl/osdep.c gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/tzone -I../../../../R/src/main -I/usr/local/include -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/tzone/localtime.c -o localtime.o making intl-compat.d from ../../../../R/src/extra/intl/intl-compat.c making hash-string.d from ../../../../R/src/extra/intl/hash-string.c making lock.d from ../../../../R/src/extra/intl/lock.c gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-match-approx.c -o tre-match-approx.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/bindtextdom.c -o bindtextdom.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/dcgettext.c -o dcgettext.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/dgettext.c -o dgettext.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/tzone -I../../../../R/src/main -I/usr/local/include -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/tzone/strftime.c -o strftime.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/gettext.c -o gettext.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/finddomain.c -o finddomain.o gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/loadmsgcat.c -o loadmsgcat.o ar -cr libtz.a localtime.o strftime.o gfortran -fPIC -g -O2 -c ../../../../R/src/extra/blas/cmplxblas.f -o cmplxblas.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/textdomain.c -o textdomain.o gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/l10nflist.c -o l10nflist.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/explodename.c -o explodename.o gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-mem.c -o tre-mem.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/dcigettext.c -o dcigettext.o gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-parse.c -o tre-parse.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/dcngettext.c -o dcngettext.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/dngettext.c -o dngettext.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/ngettext.c -o ngettext.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/plural.c -o plural.o gcc -I../../../../R/src/extra/tre -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../../R/src/extra/tre/tre-stack.c -o tre-stack.o gfortran -fPIC -g -O2 -c ../../../../R/src/extra/blas/cmplxblas2.f90 -o cmplxblas2.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o ranlib libtre.a gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/plural-exp.c -o plural-exp.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/langprefs.c -o langprefs.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/localcharset.c -o localcharset.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/localename.c -o localename.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/printf.c -o printf.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/osdep.c -o osdep.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/intl-compat.c -o intl-compat.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/hash-string.c -o hash-string.o gcc -I. -I../../../src/include -I../../../../R/src/include -I../../../../R/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -g -O2 -c ../../../../R/src/extra/intl/lock.c -o lock.o ar -cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols ranlib libintl.a /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o libRblas.dylib blas.o blas2.o cmplxblas.o cmplxblas2.o -install_name libRblas.dylib -headerpad_max_install_names -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir /Users/pd/r-devel/BUILD-dist/lib config.status: creating src/appl/Makefile making integrate.d from ../../../R/src/appl/integrate.c making interv.d from ../../../R/src/appl/interv.c making maxcol.d from ../../../R/src/appl/maxcol.c making optim.d from ../../../R/src/appl/optim.c making pretty.d from ../../../R/src/appl/pretty.c making uncmin.d from ../../../R/src/appl/uncmin.c gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/appl/integrate.c -o integrate.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/appl/interv.c -o interv.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/appl/maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/appl/optim.c -o optim.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/appl/pretty.c -o pretty.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/appl/uncmin.c -o uncmin.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dchdc.f -o dchdc.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dpbfa.f -o dpbfa.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dpbsl.f -o dpbsl.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dpoco.f -o dpoco.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dpodi.f -o dpodi.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dpofa.f -o dpofa.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dposl.f -o dposl.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dqrdc.f -o dqrdc.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dqrdc2.f -o dqrdc2.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dqrls.f -o dqrls.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dqrsl.f -o dqrsl.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dqrutl.f -o dqrutl.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dsvdc.f -o dsvdc.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dtrco.f -o dtrco.o gfortran -fPIE -g -O2 -c ../../../R/src/appl/dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a config.status: creating src/nmath/Makefile making mlutils.d from ../../../R/src/nmath/mlutils.c making d1mach.d from ../../../R/src/nmath/d1mach.c making fmax2.d from ../../../R/src/nmath/fmax2.c making i1mach.d from ../../../R/src/nmath/i1mach.c making fmin2.d from ../../../R/src/nmath/fmin2.c making fprec.d from ../../../R/src/nmath/fprec.c making fround.d from ../../../R/src/nmath/fround.c making ftrunc.d from ../../../R/src/nmath/ftrunc.c making sign.d from ../../../R/src/nmath/sign.c making fsign.d from ../../../R/src/nmath/fsign.c making imax2.d from ../../../R/src/nmath/imax2.c making imin2.d from ../../../R/src/nmath/imin2.c making chebyshev.d from ../../../R/src/nmath/chebyshev.c making log1p.d from ../../../R/src/nmath/log1p.c making lgammacor.d from ../../../R/src/nmath/lgammacor.c making gammalims.d from ../../../R/src/nmath/gammalims.c making stirlerr.d from ../../../R/src/nmath/stirlerr.c making gamma.d from ../../../R/src/nmath/gamma.c making bd0.d from ../../../R/src/nmath/bd0.c making lgamma.d from ../../../R/src/nmath/lgamma.c making gamma_cody.d from ../../../R/src/nmath/gamma_cody.c making beta.d from ../../../R/src/nmath/beta.c making lbeta.d from ../../../R/src/nmath/lbeta.c making polygamma.d from ../../../R/src/nmath/polygamma.c making bessel_i.d from ../../../R/src/nmath/bessel_i.c making cospi.d from ../../../R/src/nmath/cospi.c making bessel_j.d from ../../../R/src/nmath/bessel_j.c making bessel_k.d from ../../../R/src/nmath/bessel_k.c making bessel_y.d from ../../../R/src/nmath/bessel_y.c making choose.d from ../../../R/src/nmath/choose.c making snorm.d from ../../../R/src/nmath/snorm.c making sexp.d from ../../../R/src/nmath/sexp.c making dgamma.d from ../../../R/src/nmath/dgamma.c making pgamma.d from ../../../R/src/nmath/pgamma.c making qgamma.d from ../../../R/src/nmath/qgamma.c making dbeta.d from ../../../R/src/nmath/dbeta.c making rgamma.d from ../../../R/src/nmath/rgamma.c making pbeta.d from ../../../R/src/nmath/pbeta.c making qbeta.d from ../../../R/src/nmath/qbeta.c making rbeta.d from ../../../R/src/nmath/rbeta.c making punif.d from ../../../R/src/nmath/punif.c making dunif.d from ../../../R/src/nmath/dunif.c making qunif.d from ../../../R/src/nmath/qunif.c making pnorm.d from ../../../R/src/nmath/pnorm.c making dnorm.d from ../../../R/src/nmath/dnorm.c making runif.d from ../../../R/src/nmath/runif.c making qnorm.d from ../../../R/src/nmath/qnorm.c making rnorm.d from ../../../R/src/nmath/rnorm.c making dlnorm.d from ../../../R/src/nmath/dlnorm.c making plnorm.d from ../../../R/src/nmath/plnorm.c making qlnorm.d from ../../../R/src/nmath/qlnorm.c making df.d from ../../../R/src/nmath/df.c making pf.d from ../../../R/src/nmath/pf.c making rlnorm.d from ../../../R/src/nmath/rlnorm.c making qf.d from ../../../R/src/nmath/qf.c making rf.d from ../../../R/src/nmath/rf.c making dnf.d from ../../../R/src/nmath/dnf.c making dt.d from ../../../R/src/nmath/dt.c making pt.d from ../../../R/src/nmath/pt.c making qt.d from ../../../R/src/nmath/qt.c making rt.d from ../../../R/src/nmath/rt.c making dnt.d from ../../../R/src/nmath/dnt.c making dchisq.d from ../../../R/src/nmath/dchisq.c making pchisq.d from ../../../R/src/nmath/pchisq.c making qchisq.d from ../../../R/src/nmath/qchisq.c making rchisq.d from ../../../R/src/nmath/rchisq.c making rnchisq.d from ../../../R/src/nmath/rnchisq.c making dbinom.d from ../../../R/src/nmath/dbinom.c making pbinom.d from ../../../R/src/nmath/pbinom.c making qbinom.d from ../../../R/src/nmath/qbinom.c making rbinom.d from ../../../R/src/nmath/rbinom.c making rmultinom.d from ../../../R/src/nmath/rmultinom.c making dcauchy.d from ../../../R/src/nmath/dcauchy.c making pcauchy.d from ../../../R/src/nmath/pcauchy.c making qcauchy.d from ../../../R/src/nmath/qcauchy.c making rcauchy.d from ../../../R/src/nmath/rcauchy.c making dexp.d from ../../../R/src/nmath/dexp.c making pexp.d from ../../../R/src/nmath/pexp.c making qexp.d from ../../../R/src/nmath/qexp.c making rexp.d from ../../../R/src/nmath/rexp.c making dgeom.d from ../../../R/src/nmath/dgeom.c making pgeom.d from ../../../R/src/nmath/pgeom.c making qgeom.d from ../../../R/src/nmath/qgeom.c making rgeom.d from ../../../R/src/nmath/rgeom.c making dhyper.d from ../../../R/src/nmath/dhyper.c making phyper.d from ../../../R/src/nmath/phyper.c making qhyper.d from ../../../R/src/nmath/qhyper.c making rhyper.d from ../../../R/src/nmath/rhyper.c making dnbinom.d from ../../../R/src/nmath/dnbinom.c making pnbinom.d from ../../../R/src/nmath/pnbinom.c making qnbinom.d from ../../../R/src/nmath/qnbinom.c making qnbinom_mu.d from ../../../R/src/nmath/qnbinom_mu.c making rnbinom.d from ../../../R/src/nmath/rnbinom.c making dpois.d from ../../../R/src/nmath/dpois.c making ppois.d from ../../../R/src/nmath/ppois.c making qpois.d from ../../../R/src/nmath/qpois.c making rpois.d from ../../../R/src/nmath/rpois.c making dweibull.d from ../../../R/src/nmath/dweibull.c making pweibull.d from ../../../R/src/nmath/pweibull.c making qweibull.d from ../../../R/src/nmath/qweibull.c making dlogis.d from ../../../R/src/nmath/dlogis.c making rweibull.d from ../../../R/src/nmath/rweibull.c making plogis.d from ../../../R/src/nmath/plogis.c making qlogis.d from ../../../R/src/nmath/qlogis.c making rlogis.d from ../../../R/src/nmath/rlogis.c making dnchisq.d from ../../../R/src/nmath/dnchisq.c making pnchisq.d from ../../../R/src/nmath/pnchisq.c making qnchisq.d from ../../../R/src/nmath/qnchisq.c making dnbeta.d from ../../../R/src/nmath/dnbeta.c making pnbeta.d from ../../../R/src/nmath/pnbeta.c making qnbeta.d from ../../../R/src/nmath/qnbeta.c making pnf.d from ../../../R/src/nmath/pnf.c making pnt.d from ../../../R/src/nmath/pnt.c making qnf.d from ../../../R/src/nmath/qnf.c making qnt.d from ../../../R/src/nmath/qnt.c making ptukey.d from ../../../R/src/nmath/ptukey.c making qtukey.d from ../../../R/src/nmath/qtukey.c making toms708.d from ../../../R/src/nmath/toms708.c making wilcox.d from ../../../R/src/nmath/wilcox.c making signrank.d from ../../../R/src/nmath/signrank.c gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/fprec.c -o fprec.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/fround.c -o fround.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/sign.c -o sign.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/fsign.c -o fsign.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/imax2.c -o imax2.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/imin2.c -o imin2.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/log1p.c -o log1p.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/bd0.c -o bd0.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/gamma.c -o gamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/beta.c -o beta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/cospi.c -o cospi.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/choose.c -o choose.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/snorm.c -o snorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/sexp.c -o sexp.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dunif.c -o dunif.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/punif.c -o punif.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qunif.c -o qunif.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/runif.c -o runif.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/df.c -o df.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pf.c -o pf.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qf.c -o qf.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rf.c -o rf.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dnf.c -o dnf.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dt.c -o dt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pt.c -o pt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qt.c -o qt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rt.c -o rt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dnt.c -o dnt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dexp.c -o dexp.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pexp.c -o pexp.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qexp.c -o qexp.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rexp.c -o rexp.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/phyper.c -o phyper.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dpois.c -o dpois.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/ppois.c -o ppois.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qpois.c -o qpois.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rpois.c -o rpois.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/plogis.c -o plogis.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pnf.c -o pnf.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/pnt.c -o pnt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnf.c -o qnf.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qnt.c -o qnt.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/toms708.c -o toms708.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/nmath/signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols ranlib libnmath.a /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols config.status: creating src/unix/Makefile making Rembedded.d from ../../../R/src/unix/Rembedded.c making dynload.d from ../../../R/src/unix/dynload.c making system.d from ../../../R/src/unix/system.c making sys-unix.d from ../../../R/src/unix/sys-unix.c making sys-std.d from ../../../R/src/unix/sys-std.c making X11.d from ../../../R/src/unix/X11.c gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/unix/Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/unix/dynload.c -o dynload.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/unix/system.c -o system.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/unix/sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/unix/sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/unix/X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -L/usr/local/lib -DR_HOME='"/Users/pd/r-devel/BUILD-dist"' \ -o Rscript ../../../R/src/unix/Rscript.c re-making gram.c bison -y -l ../../../R/src/main/gram.y ../../../R/src/main/gram.y:1.1-7: warning: POSIX Yacc does not support %define [-Wyacc] 1 | %define parse.error verbose | ^~~~~~~ ../../../R/src/main/gram.y:399.1-12: warning: POSIX Yacc does not support %token-table [-Wyacc] 399 | %token-table | ^~~~~~~~~~~~ ../../../R/src/main/gram.y: warning: 27 shift/reduce conflicts [-Wconflicts-sr] ../../../R/src/main/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples /bin/sh ../../../R/tools/move-if-change y.tab.c ../../../R/src/main/gram.c config.status: creating src/main/Makefile making CommandLineArgs.d from ../../../R/src/main/CommandLineArgs.c making Rdynload.d from ../../../R/src/main/Rdynload.c making Renviron.d from ../../../R/src/main/Renviron.c making RNG.d from ../../../R/src/main/RNG.c making agrep.d from ../../../R/src/main/agrep.c making altclasses.d from ../../../R/src/main/altclasses.c making altrep.d from ../../../R/src/main/altrep.c making apply.d from ../../../R/src/main/apply.c making arithmetic.d from ../../../R/src/main/arithmetic.c making array.d from ../../../R/src/main/array.c making attrib.d from ../../../R/src/main/attrib.c making bind.d from ../../../R/src/main/bind.c making builtin.d from ../../../R/src/main/builtin.c making character.d from ../../../R/src/main/character.c making clippath.d from ../../../R/src/main/clippath.c making coerce.d from ../../../R/src/main/coerce.c making colors.d from ../../../R/src/main/colors.c making complex.d from ../../../R/src/main/complex.c making connections.d from ../../../R/src/main/connections.c making context.d from ../../../R/src/main/context.c making cum.d from ../../../R/src/main/cum.c making dcf.d from ../../../R/src/main/dcf.c making datetime.d from ../../../R/src/main/datetime.c making debug.d from ../../../R/src/main/debug.c making deparse.d from ../../../R/src/main/deparse.c making devices.d from ../../../R/src/main/devices.c making dotcode.d from ../../../R/src/main/dotcode.c making dounzip.d from ../../../R/src/main/dounzip.c making dstruct.d from ../../../R/src/main/dstruct.c making duplicate.d from ../../../R/src/main/duplicate.c making edit.d from ../../../R/src/main/edit.c making engine.d from ../../../R/src/main/engine.c making envir.d from ../../../R/src/main/envir.c making errors.d from ../../../R/src/main/errors.c making eval.d from ../../../R/src/main/eval.c making flexiblas.d from ../../../R/src/main/flexiblas.c making format.d from ../../../R/src/main/format.c making gevents.d from ../../../R/src/main/gevents.c making gram.d from ../../../R/src/main/gram.c making gram-ex.d from ../../../R/src/main/gram-ex.c making graphics.d from ../../../R/src/main/graphics.c making grep.d from ../../../R/src/main/grep.c making identical.d from ../../../R/src/main/identical.c making inlined.d from ../../../R/src/main/inlined.c making inspect.d from ../../../R/src/main/inspect.c making internet.d from ../../../R/src/main/internet.c making iosupport.d from ../../../R/src/main/iosupport.c making lapack.d from ../../../R/src/main/lapack.c making list.d from ../../../R/src/main/list.c making localecharset.d from ../../../R/src/main/localecharset.c making logic.d from ../../../R/src/main/logic.c making machine.d from ../../../R/src/main/machine.c making main.d from ../../../R/src/main/main.c making mapply.d from ../../../R/src/main/mapply.c making mask.d from ../../../R/src/main/mask.c making match.d from ../../../R/src/main/match.c making names.d from ../../../R/src/main/names.c making memory.d from ../../../R/src/main/memory.c making objects.d from ../../../R/src/main/objects.c making options.d from ../../../R/src/main/options.c making paste.d from ../../../R/src/main/paste.c making patterns.d from ../../../R/src/main/patterns.c making platform.d from ../../../R/src/main/platform.c making plot.d from ../../../R/src/main/plot.c making plotmath.d from ../../../R/src/main/plotmath.c making plot3d.d from ../../../R/src/main/plot3d.c making print.d from ../../../R/src/main/print.c making printarray.d from ../../../R/src/main/printarray.c making printvector.d from ../../../R/src/main/printvector.c making printutils.d from ../../../R/src/main/printutils.c making qsort.d from ../../../R/src/main/qsort.c making radixsort.d from ../../../R/src/main/radixsort.c making random.d from ../../../R/src/main/random.c making raw.d from ../../../R/src/main/raw.c making registration.d from ../../../R/src/main/registration.c making relop.d from ../../../R/src/main/relop.c making rlocale.d from ../../../R/src/main/rlocale.c making saveload.d from ../../../R/src/main/saveload.c making seq.d from ../../../R/src/main/seq.c making scan.d from ../../../R/src/main/scan.c making serialize.d from ../../../R/src/main/serialize.c making sort.d from ../../../R/src/main/sort.c making source.d from ../../../R/src/main/source.c making split.d from ../../../R/src/main/split.c making sprintf.d from ../../../R/src/main/sprintf.c making startup.d from ../../../R/src/main/startup.c making subassign.d from ../../../R/src/main/subassign.c making subscript.d from ../../../R/src/main/subscript.c making subset.d from ../../../R/src/main/subset.c making summary.d from ../../../R/src/main/summary.c making sysutils.d from ../../../R/src/main/sysutils.c making unique.d from ../../../R/src/main/unique.c making times.d from ../../../R/src/main/times.c making util.d from ../../../R/src/main/util.c making version.d from ../../../R/src/main/version.c making g_alab_her.d from ../../../R/src/main/g_alab_her.c making g_cntrlify.d from ../../../R/src/main/g_cntrlify.c making g_fontdb.d from ../../../R/src/main/g_fontdb.c making g_her_glyph.d from ../../../R/src/main/g_her_glyph.c making Rmain.d from ../../../R/src/main/Rmain.c making alloca.d from ../../../R/src/main/alloca.c making mkdtemp.d from ../../../R/src/main/mkdtemp.c making strdup.d from ../../../R/src/main/strdup.c making strncasecmp.d from ../../../R/src/main/strncasecmp.c gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/Rmain.c -o Rmain.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/CommandLineArgs.c -o CommandLineArgs.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/Rdynload.c -o Rdynload.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/Renviron.c -o Renviron.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/RNG.c -o RNG.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/agrep.c -o agrep.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/altclasses.c -o altclasses.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/altrep.c -o altrep.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/apply.c -o apply.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/arithmetic.c -o arithmetic.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/array.c -o array.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/attrib.c -o attrib.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/bind.c -o bind.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/builtin.c -o builtin.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/character.c -o character.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/clippath.c -o clippath.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/coerce.c -o coerce.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/colors.c -o colors.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/complex.c -o complex.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/connections.c -o connections.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/context.c -o context.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/cum.c -o cum.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/dcf.c -o dcf.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/datetime.c -o datetime.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/debug.c -o debug.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/deparse.c -o deparse.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/devices.c -o devices.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/dotcode.c -o dotcode.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/dounzip.c -o dounzip.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/dstruct.c -o dstruct.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/duplicate.c -o duplicate.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/edit.c -o edit.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/engine.c -o engine.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/envir.c -o envir.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/errors.c -o errors.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/eval.c -o eval.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/flexiblas.c -o flexiblas.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/format.c -o format.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/gevents.c -o gevents.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/gram.c -o gram.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/gram-ex.c -o gram-ex.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/graphics.c -o graphics.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/grep.c -o grep.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/identical.c -o identical.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/inlined.c -o inlined.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/inspect.c -o inspect.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/internet.c -o internet.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/iosupport.c -o iosupport.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/lapack.c -o lapack.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/list.c -o list.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/localecharset.c -o localecharset.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/logic.c -o logic.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/machine.c -o machine.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/main.c -o main.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/mapply.c -o mapply.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/mask.c -o mask.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/match.c -o match.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/memory.c -o memory.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/names.c -o names.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/objects.c -o objects.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/options.c -o options.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/paste.c -o paste.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/patterns.c -o patterns.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/platform.c -o platform.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/plot.c -o plot.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/plot3d.c -o plot3d.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/plotmath.c -o plotmath.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/print.c -o print.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/printarray.c -o printarray.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/printvector.c -o printvector.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/printutils.c -o printutils.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/qsort.c -o qsort.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/radixsort.c -o radixsort.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/random.c -o random.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/raw.c -o raw.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/registration.c -o registration.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/relop.c -o relop.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/rlocale.c -o rlocale.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/saveload.c -o saveload.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/scan.c -o scan.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/seq.c -o seq.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/serialize.c -o serialize.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/sort.c -o sort.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/source.c -o source.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/split.c -o split.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/sprintf.c -o sprintf.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/startup.c -o startup.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/subassign.c -o subassign.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/subscript.c -o subscript.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/subset.c -o subset.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/summary.c -o summary.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/sysutils.c -o sysutils.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/times.c -o times.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/unique.c -o unique.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/util.c -o util.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/version.c -o version.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/g_alab_her.c -o g_alab_her.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/g_cntrlify.c -o g_cntrlify.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/g_fontdb.c -o g_fontdb.o gcc -I../../../R/src/extra -I../../../R/src/extra/xdr -I. -I../../src/include -I../../../R/src/include -I/usr/local/include -I../../../R/src/nmath -DHAVE_CONFIG_H -g -O2 -c ../../../R/src/main/g_her_glyph.c -o g_her_glyph.o gfortran -fPIE -g -O2 -c ../../../R/src/main/xxxpr.f -o xxxpr.o gcc -L/usr/local/lib -o R.bin Rmain.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a ../extra/tzone/libtz.a -L"../../lib" -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation -lreadline -lncurses -L/opt/R/x86_64/lib -lpcre2-8 -llzma -lbz2 -lz -licucore -ldl -lm -liconv mkdir /Users/pd/r-devel/BUILD-dist/bin/exec config.status: creating src/modules/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/X11/Makefile making Rhttpd.d from ../../../../R/src/modules/internet/Rhttpd.c making Rsock.d from ../../../../R/src/modules/internet/Rsock.c making devX11.d from ../../../../R/src/modules/X11/devX11.c making Lapack.d from ../../../../R/src/modules/lapack/Lapack.c making internet.d from ../../../../R/src/modules/internet/internet.c making libcurl.d from ../../../../R/src/modules/internet/libcurl.c gfortran -fPIC -g -O2 -msse2 -mfpmath=sse -c ../../../../R/src/modules/lapack/dlamch.f -o dlamch.o making rotated.d from ../../../../R/src/modules/X11/rotated.c making sock.d from ../../../../R/src/modules/internet/sock.c making sockconn.d from ../../../../R/src/modules/internet/sockconn.c making rbitmap.d from ../../../../R/src/modules/X11/rbitmap.c gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/dlapack.f -o dlapack.o gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/cmplx.f -o cmplx.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/internet/Rhttpd.c -o Rhttpd.o gcc -I/opt/R/x86_64/include/libpng16 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -I. -I../../../src/include -I../../../../R/src/include -I/usr/X11/include -DFRIBIDI_LIB_STATIC -DPCRE2_STATIC -I/opt/R/x86_64/include/pango-1.0 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/fribidi -I/opt/R/x86_64/include/cairo -I/opt/X11/include -I/opt/R/x86_64/include/cairo -I/opt/R/x86_64/include -I/opt/R/x86_64/include/pixman-1 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/freetype2 -I/opt/R/x86_64/include/harfbuzz -I/opt/R/x86_64/include/glib-2.0 -I/opt/R/x86_64/lib/glib-2.0/include -I/opt/R/x86_64/include -I/opt/R/x86_64/include/libpng16 -I../../../../R/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/X11/devX11.c -o devX11.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/internet/Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/internet/internet.c -o internet.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/internet/libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/internet/sock.c -o sock.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/internet/sockconn.c -o sockconn.o gcc -I/opt/R/x86_64/include/libpng16 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -I. -I../../../src/include -I../../../../R/src/include -I/usr/X11/include -DFRIBIDI_LIB_STATIC -DPCRE2_STATIC -I/opt/R/x86_64/include/pango-1.0 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/fribidi -I/opt/R/x86_64/include/cairo -I/opt/X11/include -I/opt/R/x86_64/include/cairo -I/opt/R/x86_64/include -I/opt/R/x86_64/include/pixman-1 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/freetype2 -I/opt/R/x86_64/include/harfbuzz -I/opt/R/x86_64/include/glib-2.0 -I/opt/R/x86_64/lib/glib-2.0/include -I/opt/R/x86_64/include -I/opt/R/x86_64/include/libpng16 -I../../../../R/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/X11/rotated.c -o rotated.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir /Users/pd/r-devel/BUILD-dist/modules gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/la_constants.f90 -o la_constants.o gcc -I/opt/R/x86_64/include/libpng16 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -I. -I../../../src/include -I../../../../R/src/include -I/usr/X11/include -DFRIBIDI_LIB_STATIC -DPCRE2_STATIC -I/opt/R/x86_64/include/pango-1.0 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/fribidi -I/opt/R/x86_64/include/cairo -I/opt/X11/include -I/opt/R/x86_64/include/cairo -I/opt/R/x86_64/include -I/opt/R/x86_64/include/pixman-1 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/freetype2 -I/opt/R/x86_64/include/harfbuzz -I/opt/R/x86_64/include/glib-2.0 -I/opt/R/x86_64/lib/glib-2.0/include -I/opt/R/x86_64/include -I/opt/R/x86_64/include/libpng16 -I../../../../R/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/X11/rbitmap.c -o rbitmap.o gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/dlartg.f90 -o dlartg.o gcc -I/opt/R/x86_64/include/libpng16 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -I. -I../../../src/include -I../../../../R/src/include -I/usr/X11/include -DFRIBIDI_LIB_STATIC -DPCRE2_STATIC -I/opt/R/x86_64/include/pango-1.0 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/fribidi -I/opt/R/x86_64/include/cairo -I/opt/X11/include -I/opt/R/x86_64/include/cairo -I/opt/R/x86_64/include -I/opt/R/x86_64/include/pixman-1 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/freetype2 -I/opt/R/x86_64/include/harfbuzz -I/opt/R/x86_64/include/glib-2.0 -I/opt/R/x86_64/lib/glib-2.0/include -I/opt/R/x86_64/include -I/opt/R/x86_64/include/libpng16 -I../../../../R/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/X11/dataentry.c -o dataentry.o gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/la_xisnan.f90 -o la_xisnan.o gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/zlartg.f90 -o zlartg.o gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/zlassq.f90 -o zlassq.o gfortran -fPIC -g -O2 -c ../../../../R/src/modules/lapack/dlassq.f90 -o dlassq.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -L/opt/R/x86_64/lib -ltiff -lwebp -lzstd -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -lz -L/opt/R/x86_64/lib -ljpeg -L/opt/R/x86_64/lib -lpng16 -lz -lSM -lICE -L/opt/R/x86_64/lib -L/opt/X11/lib -L/opt/R/x86_64/lib -L/opt/X11/lib -L/opt/R/x86_64/lib -lpangocairo-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lpangoft2-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lpango-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lgio-2.0 -lintl -framework Foundation -framework CoreFoundation -framework AppKit -lresolv -lgmodule-2.0 -lintl -lfribidi -lz -lSM -lICE -lX11 -lXext -lcairo -lz -lXrender -lSM -lICE -lX11 -lXext -lgobject-2.0 -lintl -lffi -lpixman-1 -lfontconfig -lexpat -lfreetype -lbz2 -lharfbuzz -lm -lglib-2.0 -lintl -lm -framework Foundation -framework CoreFoundation -framework AppKit -framework Carbon -lpcre2-8 -lpng16 -lz -L/usr/X11/lib -lX11 -lXt -lXmu -Wl,-framework -Wl,CoreFoundation gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -L/opt/R/x86_64/lib -L/opt/X11/lib -L/opt/R/x86_64/lib -L/opt/X11/lib -L/opt/R/x86_64/lib -lpangocairo-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lpangoft2-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lpango-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lgio-2.0 -lintl -framework Foundation -framework CoreFoundation -framework AppKit -lresolv -lgmodule-2.0 -lintl -lfribidi -lz -lSM -lICE -lX11 -lXext -lcairo -lz -lXrender -lSM -lICE -lX11 -lXext -lgobject-2.0 -lintl -lffi -lpixman-1 -lfontconfig -lexpat -lfreetype -lbz2 -lharfbuzz -lm -lglib-2.0 -lintl -lm -framework Foundation -framework CoreFoundation -framework AppKit -framework Carbon -lpcre2-8 -lpng16 -lz -L/usr/X11/lib -lX11 -lXt -lXmu -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups ld: warning: -undefined dynamic_lookup may not work with chained fixups gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack.o cmplx.o dlartg.o dlassq.o la_constants.o la_xisnan.o zlartg.o zlassq.o -install_name libRlapack.dylib -compatibility_version 4.5.0 -current_version 4.5.0 -headerpad_max_install_names -L"../../../lib" -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath ld: warning: -undefined dynamic_lookup may not work with chained fixups ld: warning: could not create compact unwind for _zhseqr_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _zpbtrf_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _dpbtrf_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _dhseqr_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _dgbtrf_: stack subq instruction is too different from dwarf stack size gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/lapack/Lapack.c -o Lapack.o gcc -I. -I../../../src/include -I../../../../R/src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../R/src/modules/lapack/../../main/flexiblas.c -o flexiblas.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o lapack.so Lapack.o flexiblas.o -Wl,-framework -Wl,CoreFoundation -L"../../../lib" -lRlapack -L"../../../lib" -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath ld: warning: -undefined dynamic_lookup may not work with chained fixups /Users/pd/r-devel/BUILD-dist/lib/libRlapack.dylib is unchanged config.status: creating src/library/Makefile mkdir ../../library config.status: creating src/library/profile/Makefile building system startup profile mkdir ../../../library/base mkdir ../../../library/base/R config.status: creating src/library/translations/Makefile building package 'translations' mkdir ../../../library/translations config.status: creating src/library/base/Makefile config.status: creating src/library/base/DESCRIPTION building package 'base' mkdir ../../../library/base/demo config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/DESCRIPTION building package 'tools' mkdir ../../../library/tools mkdir ../../../library/tools/R config.status: creating src/library/tools/src/Makefile making text.d from ../../../../../R/src/library/tools/src/text.c making init.d from ../../../../../R/src/library/tools/src/init.c making Rmd5.d from ../../../../../R/src/library/tools/src/Rmd5.c making md5.d from ../../../../../R/src/library/tools/src/md5.c making signals.d from ../../../../../R/src/library/tools/src/signals.c making install.d from ../../../../../R/src/library/tools/src/install.c making getfmts.d from ../../../../../R/src/library/tools/src/getfmts.c making http.d from ../../../../../R/src/library/tools/src/http.c re-making gramRd.c bison -y -l ../../../../../R/src/library/tools/src/gramRd.y gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/init.c -o init.o making pdscan.d from ../../../../../R/src/library/tools/src/pdscan.c ../../../../../R/src/library/tools/src/gramRd.y:1.1-7: warning: POSIX Yacc does not support %define [-Wyacc] 1 | %define parse.error verbose | ^~~~~~~ ../../../../../R/src/library/tools/src/gramRd.y:202.1-12: warning: POSIX Yacc does not support %token-table [-Wyacc] 202 | %token-table | ^~~~~~~~~~~~ ../../../../../R/src/library/tools/src/gramRd.y:223.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 223 | %destructor { RELEASE_SV($$); } SECTIONHEADER RSECTIONHEADER | ^~~~~~~~~~~ ../../../../../R/src/library/tools/src/gramRd.y: warning: 54 shift/reduce conflicts [-Wconflicts-sr] ../../../../../R/src/library/tools/src/gramRd.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/pdscan.c -o pdscan.o /bin/sh ../../../../../R/tools/move-if-change y.tab.c ../../../../../R/src/library/tools/src/gramRd.c re-making gramLatex.c bison -y -l ../../../../../R/src/library/tools/src/gramLatex.y ../../../../../R/src/library/tools/src/gramLatex.y:1.1-7: warning: POSIX Yacc does not support %define [-Wyacc] 1 | %define parse.error verbose | ^~~~~~~ ../../../../../R/src/library/tools/src/gramLatex.y:168.1-12: warning: POSIX Yacc does not support %token-table [-Wyacc] 168 | %token-table | ^~~~~~~~~~~~ ../../../../../R/src/library/tools/src/gramLatex.y:182.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 182 | %destructor { RELEASE_SV($$); } MACRO TEXT COMMENT BEGIN END | ^~~~~~~~~~~ making gramRd.d from ../../../../../R/src/library/tools/src/gramRd.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/gramRd.c -o gramRd.o /bin/sh ../../../../../R/tools/move-if-change y.tab.c ../../../../../R/src/library/tools/src/gramLatex.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tools/src/gramLatex.c -o gramLatex.o making gramLatex.d from ../../../../../R/src/library/tools/src/gramLatex.c gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/tools/libs installing 'sysdata.rda' config.status: creating src/library/compiler/Makefile config.status: creating src/library/compiler/DESCRIPTION building package 'compiler' mkdir ../../../library/compiler mkdir ../../../library/compiler/R byte-compiling package 'compiler' byte-compiling package 'base' byte-compiling package 'tools' config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/DESCRIPTION building package 'utils' mkdir ../../../library/utils mkdir ../../../library/utils/doc mkdir ../../../library/utils/R mkdir ../../../library/utils/Sweave mkdir ../../../library/utils/misc config.status: creating src/library/utils/src/Makefile making init.d from ../../../../../R/src/library/utils/src/init.c making io.d from ../../../../../R/src/library/utils/src/io.c making size.d from ../../../../../R/src/library/utils/src/size.c making sock.d from ../../../../../R/src/library/utils/src/sock.c making utils.d from ../../../../../R/src/library/utils/src/utils.c making stubs.d from ../../../../../R/src/library/utils/src/stubs.c making hashtab.d from ../../../../../R/src/library/utils/src/hashtab.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/utils.c -o utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/utils/src/hashtab.c -o hashtab.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/utils/libs installing 'sysdata.rda' byte-compiling package 'utils' config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/DESCRIPTION building package 'grDevices' mkdir ../../../library/grDevices mkdir ../../../library/grDevices/R mkdir ../../../library/grDevices/afm mkdir ../../../library/grDevices/enc mkdir ../../../library/grDevices/fonts mkdir ../../../library/grDevices/fonts/Roboto mkdir ../../../library/grDevices/fonts/Montserrat mkdir ../../../library/grDevices/fonts/Montserrat/static mkdir ../../../library/grDevices/icc config.status: creating src/library/grDevices/src/Makefile making axis_scales.d from ../../../../../R/src/library/grDevices/src/axis_scales.c making chull.d from ../../../../../R/src/library/grDevices/src/chull.c making devices.d from ../../../../../R/src/library/grDevices/src/devices.c making init.d from ../../../../../R/src/library/grDevices/src/init.c making stubs.d from ../../../../../R/src/library/grDevices/src/stubs.c making colors.d from ../../../../../R/src/library/grDevices/src/colors.c making clippath.d from ../../../../../R/src/library/grDevices/src/clippath.c making patterns.d from ../../../../../R/src/library/grDevices/src/patterns.c making mask.d from ../../../../../R/src/library/grDevices/src/mask.c making group.d from ../../../../../R/src/library/grDevices/src/group.c making devCairo.d from ../../../../../R/src/library/grDevices/src/devCairo.c making devPicTeX.d from ../../../../../R/src/library/grDevices/src/devPicTeX.c making devQuartz.d from ../../../../../R/src/library/grDevices/src/devQuartz.c making devPS.d from ../../../../../R/src/library/grDevices/src/devPS.c making qdBitmap.d from ../../../../../R/src/library/grDevices/src/qdBitmap.c making qdPDF.d from ../../../../../R/src/library/grDevices/src/qdPDF.c making qdCocoa.d from ../../../../../R/src/library/grDevices/src/qdCocoa.m gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/group.c -o group.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/devQuartz.c -o devQuartz.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/qdBitmap.c -o qdBitmap.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grDevices/src/qdPDF.c -o qdPDF.o ../../../../../R/src/library/grDevices/src/devQuartz.c:2020:5: warning: 'CGContextShowGlyphsWithAdvances' is deprecated: first deprecated in macOS 10.9 - No longer supported [-Wdeprecated-declarations] CGContextShowGlyphsWithAdvances(ctx,glyphs, g_adv, len); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGContext.h:1070:16: note: 'CGContextShowGlyphsWithAdvances' has been explicitly marked deprecated here CG_EXTERN void CGContextShowGlyphsWithAdvances(CGContextRef cg_nullable c, ^ ../../../../../R/src/library/grDevices/src/qdBitmap.c:66:39: warning: 'CFURLCreateStringByAddingPercentEscapes' is deprecated: first deprecated in macOS 10.11 - Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid). [-Wdeprecated-declarations] CFStringRef pathEscaped = CFURLCreateStringByAddingPercentEscapes(kCFAllocatorDefault, pathString, NULL, NULL, kCFStringEncodingUTF8); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CFURL.h:408:13: note: 'CFURLCreateStringByAddingPercentEscapes' has been explicitly marked deprecated here CFStringRef CFURLCreateStringByAddingPercentEscapes(CFAllocatorRef allocator, CFStringRef originalString, CFStringRef charactersToLeaveUnescaped, CFStringRef legalURLCharactersToBeEscaped, CFStringEncoding encoding) API_DEPRECATED("Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid).", macos(10.0,10.11), ios(2.0,9.0), watchos(2.0,2.0), tvos(9.0,9.0)); ^ 1 warning generated. gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -fobjc-exceptions -c ../../../../../R/src/library/grDevices/src/qdCocoa.m -o qdCocoa.o 1 warning generated. ../../../../../R/src/library/grDevices/src/qdCocoa.m:94:22: warning: 'NSTitledWindowMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] styleMask: NSTitledWindowMask|NSClosableWindowMask| ^~~~~~~~~~~~~~~~~~ NSWindowStyleMaskTitled /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:972:32: note: 'NSTitledWindowMask' has been explicitly marked deprecated here static const NSWindowStyleMask NSTitledWindowMask API_DEPRECATED_WITH_REPLACEMENT("NSWindowStyleMaskTitled", macos(10.0,10.12)) = NSWindowStyleMaskTitled; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:94:41: warning: 'NSClosableWindowMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] styleMask: NSTitledWindowMask|NSClosableWindowMask| ^~~~~~~~~~~~~~~~~~~~ NSWindowStyleMaskClosable /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:973:32: note: 'NSClosableWindowMask' has been explicitly marked deprecated here static const NSWindowStyleMask NSClosableWindowMask API_DEPRECATED_WITH_REPLACEMENT("NSWindowStyleMaskClosable", macos(10.0,10.12)) = NSWindowStyleMaskClosable; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:95:8: warning: 'NSMiniaturizableWindowMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] NSMiniaturizableWindowMask|NSResizableWindowMask//|NSTexturedBackgroundWindowMask ^~~~~~~~~~~~~~~~~~~~~~~~~~ NSWindowStyleMaskMiniaturizable /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:974:32: note: 'NSMiniaturizableWindowMask' has been explicitly marked deprecated here static const NSWindowStyleMask NSMiniaturizableWindowMask API_DEPRECATED_WITH_REPLACEMENT("NSWindowStyleMaskMiniaturizable", macos(10.0,10.12)) = NSWindowStyleMaskMiniaturizable; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:95:35: warning: 'NSResizableWindowMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] NSMiniaturizableWindowMask|NSResizableWindowMask//|NSTexturedBackgroundWindowMask ^~~~~~~~~~~~~~~~~~~~~ NSWindowStyleMaskResizable /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:975:32: note: 'NSResizableWindowMask' has been explicitly marked deprecated here static const NSWindowStyleMask NSResizableWindowMask API_DEPRECATED_WITH_REPLACEMENT("NSWindowStyleMaskResizable", macos(10.0,10.12)) = NSWindowStyleMaskResizable; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:102:23: warning: sending 'QuartzCocoaView *' to parameter of incompatible type 'id _Nullable' [window setDelegate: view]; ^~~~ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:339:49: note: passing argument to parameter 'delegate' here @property (nullable, weak) id delegate; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:269:6: warning: 'setRequiredFileType:' is deprecated: first deprecated in macOS 10.6 - Use -setAllowedFileTypes: instead [-Wdeprecated-declarations] [sp setRequiredFileType:@"pdf"]; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:206:1: note: 'setRequiredFileType:' has been explicitly marked deprecated here - (void)setRequiredFileType:(nullable NSString *)type API_DEPRECATED("Use -setAllowedFileTypes: instead", macos(10.0,10.6)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:271:19: warning: 'runModalForDirectory:file:' is deprecated: first deprecated in macOS 10.6 - Use -runModal instead. The following parameters are replaced by properties: 'path' is replaced by 'directoryURL' and 'name' by 'nameFieldStringValue'. [-Wdeprecated-declarations] int answer = [sp runModalForDirectory:nil file:@"Rplot.pdf"]; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:208:1: note: 'runModalForDirectory:file:' has been explicitly marked deprecated here - (NSInteger)runModalForDirectory:(nullable NSString *)path file:(nullable NSString *)name API_DEPRECATED("Use -runModal instead. The following parameters are replaced by properties: 'path' is replaced by 'directoryURL' and 'name' by 'nameFieldStringValue'.", macos(10.0,10.6)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:272:15: warning: 'NSOKButton' is deprecated: first deprecated in macOS 10.10 [-Wdeprecated-declarations] if(answer == NSOKButton) ^~~~~~~~~~ NSModalResponseOK /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPanel.h:51:5: note: 'NSOKButton' has been explicitly marked deprecated here NSOKButton API_DEPRECATED_WITH_REPLACEMENT("NSModalResponseOK", macos(10.0,10.10)) = NSModalResponseOK, ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:273:29: warning: 'filename' is deprecated: first deprecated in macOS 10.6 - Use -URL instead [-Wdeprecated-declarations] if (![self writeAsPDF:[sp filename]]) NSBeep(); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:202:1: note: 'filename' has been explicitly marked deprecated here - (NSString *)filename API_DEPRECATED("Use -URL instead", macos(10.0,10.6)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:307:50: warning: 'NSPDFPboardType' is deprecated: first deprecated in macOS 10.14 [-Wdeprecated-declarations] [pb declareTypes: [NSArray arrayWithObjects: NSPDFPboardType, nil ] owner:nil]; ^~~~~~~~~~~~~~~ NSPasteboardTypePDF /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPasteboard.h:322:32: note: 'NSPDFPboardType' has been explicitly marked deprecated here APPKIT_EXTERN NSPasteboardType NSPDFPboardType API_DEPRECATED_WITH_REPLACEMENT("NSPasteboardTypePDF", macos(10.0,10.14)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:308:48: warning: 'NSPDFPboardType' is deprecated: first deprecated in macOS 10.14 [-Wdeprecated-declarations] [pb setData: (NSMutableData*) data forType:NSPDFPboardType]; ^~~~~~~~~~~~~~~ NSPasteboardTypePDF /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPasteboard.h:322:32: note: 'NSPDFPboardType' has been explicitly marked deprecated here APPKIT_EXTERN NSPasteboardType NSPDFPboardType API_DEPRECATED_WITH_REPLACEMENT("NSPasteboardTypePDF", macos(10.0,10.14)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:318:41: warning: 'NSFitPagination' is deprecated: first deprecated in macOS 11.0 [-Wdeprecated-declarations] [printInfo setHorizontalPagination: NSFitPagination]; ^~~~~~~~~~~~~~~ NSPrintingPaginationModeFit /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPrintInfo.h:207:39: note: 'NSFitPagination' has been explicitly marked deprecated here static const NSPrintingPaginationMode NSFitPagination API_DEPRECATED_WITH_REPLACEMENT("NSPrintingPaginationModeFit", macos(10.0, 11.0)) = NSPrintingPaginationModeFit; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:319:39: warning: 'NSAutoPagination' is deprecated: first deprecated in macOS 11.0 [-Wdeprecated-declarations] [printInfo setVerticalPagination: NSAutoPagination]; ^~~~~~~~~~~~~~~~ NSPrintingPaginationModeAutomatic /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPrintInfo.h:206:39: note: 'NSAutoPagination' has been explicitly marked deprecated here static const NSPrintingPaginationMode NSAutoPagination API_DEPRECATED_WITH_REPLACEMENT("NSPrintingPaginationModeAutomatic", macos(10.0, 11.0)) = NSPrintingPaginationModeAutomatic; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:355:60: warning: 'graphicsPort' is deprecated: first deprecated in macOS 10.14 [-Wdeprecated-declarations] CGContextRef ctx = [[NSGraphicsContext currentContext] graphicsPort]; ^~~~~~~~~~~~ CGContext /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSGraphicsContext.h:110:28: note: property 'graphicsPort' is declared deprecated here @property (readonly) void *graphicsPort NS_RETURNS_INNER_POINTER API_DEPRECATED_WITH_REPLACEMENT("CGContext", macos(10.0,10.14)); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSGraphicsContext.h:110:28: note: 'graphicsPort' has been explicitly marked deprecated here ../../../../../R/src/library/grDevices/src/qdCocoa.m:443:17: warning: 'NSControlKeyMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] if (mf&(NSControlKeyMask|NSRightMouseDownMask|NSOtherMouseDownMask)) ^~~~~~~~~~~~~~~~ NSEventModifierFlagControl /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSEvent.h:179:35: note: 'NSControlKeyMask' has been explicitly marked deprecated here static const NSEventModifierFlags NSControlKeyMask API_DEPRECATED_WITH_REPLACEMENT("NSEventModifierFlagControl", macos(10.0,10.12)) = NSEventModifierFlagControl; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:443:34: warning: 'NSRightMouseDownMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] if (mf&(NSControlKeyMask|NSRightMouseDownMask|NSOtherMouseDownMask)) ^~~~~~~~~~~~~~~~~~~~ NSEventMaskRightMouseDown /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSEvent.h:137:26: note: 'NSRightMouseDownMask' has been explicitly marked deprecated here static const NSEventMask NSRightMouseDownMask API_DEPRECATED_WITH_REPLACEMENT("NSEventMaskRightMouseDown", macos(10.0,10.12)) = NSEventMaskRightMouseDown; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:443:55: warning: 'NSOtherMouseDownMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] if (mf&(NSControlKeyMask|NSRightMouseDownMask|NSOtherMouseDownMask)) ^~~~~~~~~~~~~~~~~~~~ NSEventMaskOtherMouseDown /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSEvent.h:155:26: note: 'NSOtherMouseDownMask' has been explicitly marked deprecated here static const NSEventMask NSOtherMouseDownMask API_DEPRECATED_WITH_REPLACEMENT("NSEventMaskOtherMouseDown", macos(10.0,10.12)) = NSEventMaskOtherMouseDown; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:597:54: warning: 'NSAnyEventMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] while ((event = [NSApp nextEventMatchingMask:NSAnyEventMask ^~~~~~~~~~~~~~ NSEventMaskAny /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSEvent.h:158:26: note: 'NSAnyEventMask' has been explicitly marked deprecated here static const NSEventMask NSAnyEventMask API_DEPRECATED_WITH_REPLACEMENT("NSEventMaskAny", macos(10.0,10.12)) = NSUIntegerMax; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:663:13: warning: 'GetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] if (GetFrontProcess(&frProc) == noErr) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:434:1: note: 'GetFrontProcess' has been explicitly marked deprecated here GetFrontProcess(ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:664:17: warning: 'GetCurrentProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] if (GetCurrentProcess(&myProc) == noErr) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:415:1: note: 'GetCurrentProcess' has been explicitly marked deprecated here MacGetCurrentProcess(ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:412:34: note: expanded from macro 'MacGetCurrentProcess' #define MacGetCurrentProcess GetCurrentProcess ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:665:21: warning: 'SameProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] if (SameProcess(&frProc, &myProc, &sameProc) == noErr && !sameProc) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:696:1: note: 'SameProcess' has been explicitly marked deprecated here SameProcess( ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:668:17: warning: 'SetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] SetFrontProcess(&myProc); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:603:1: note: 'SetFrontProcess' has been explicitly marked deprecated here SetFrontProcess(const ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:782:55: warning: 'NSAnyEventMask' is deprecated: first deprecated in macOS 10.12 [-Wdeprecated-declarations] NSEvent *event = [NSApp nextEventMatchingMask:NSAnyEventMask ^~~~~~~~~~~~~~ NSEventMaskAny /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSEvent.h:158:26: note: 'NSAnyEventMask' has been explicitly marked deprecated here static const NSEventMask NSAnyEventMask API_DEPRECATED_WITH_REPLACEMENT("NSEventMaskAny", macos(10.0,10.12)) = NSUIntegerMax; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:858:24: warning: 'canDraw' is deprecated: first deprecated in macOS 10.14 - If a view needs display, -drawRect: or -updateLayer will be called automatically when the view is able to draw. To check whether a view is in a window, call -window. To check whether a view is hidden, call -isHiddenOrHasHiddenAncestor. [-Wdeprecated-declarations] if (![ci->view canDraw]) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSView.h:185:27: note: property 'canDraw' is declared deprecated here @property (readonly) BOOL canDraw API_DEPRECATED("If a view needs display, -drawRect: or -updateLayer will be called automatically when the view is able to draw. To check whether a view is in a window, call -window. To check whether a view is hidden, call -isHiddenOrHasHiddenAncestor.", macos(10.0,10.14)); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSView.h:185:27: note: 'canDraw' has been explicitly marked deprecated here ../../../../../R/src/library/grDevices/src/qdCocoa.m:861:19: warning: 'lockFocus' is deprecated: first deprecated in macOS 10.14 - To draw, subclass NSView and implement -drawRect:; AppKit's automatic deferred display mechanism will call -drawRect: as necessary to display the view. [-Wdeprecated-declarations] [ci->view lockFocus]; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSView.h:188:1: note: 'lockFocus' has been explicitly marked deprecated here - (void)lockFocus API_DEPRECATED("To draw, subclass NSView and implement -drawRect:; AppKit's automatic deferred display mechanism will call -drawRect: as necessary to display the view.", macos(10.0,10.14)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:863:37: warning: 'initWithFocusedViewRect:' is deprecated: first deprecated in macOS 10.14 - Use -[NSView cacheDisplayInRect:toBitmapImageRep:] to snapshot a view. [-Wdeprecated-declarations] initWithFocusedViewRect: ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSBitmapImageRep.h:81:1: note: 'initWithFocusedViewRect:' has been explicitly marked deprecated here - (nullable instancetype)initWithFocusedViewRect:(NSRect)rect API_DEPRECATED("Use -[NSView cacheDisplayInRect:toBitmapImageRep:] to snapshot a view.", macos(10.0,10.14)); ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:872:58: warning: 'NSFloatingPointSamplesBitmapFormat' is deprecated: first deprecated in macOS 10.14 [-Wdeprecated-declarations] if ([rep isPlanar] || [rep bitsPerSample] != 8 || (bf & NSFloatingPointSamplesBitmapFormat) || (bpp != 24 && bpp != 32)) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NSBitmapFormatFloatingPointSamples /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSBitmapImageRep.h:164:29: note: 'NSFloatingPointSamplesBitmapFormat' has been explicitly marked deprecated here static const NSBitmapFormat NSFloatingPointSamplesBitmapFormat API_DEPRECATED_WITH_REPLACEMENT("NSBitmapFormatFloatingPointSamples", macos(10.0,10.14)) = NSBitmapFormatFloatingPointSamples; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:887:11: warning: 'NSAlphaFirstBitmapFormat' is deprecated: first deprecated in macOS 10.14 [-Wdeprecated-declarations] if (bf & NSAlphaFirstBitmapFormat) /* ARGB */ ^~~~~~~~~~~~~~~~~~~~~~~~ NSBitmapFormatAlphaFirst /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSBitmapImageRep.h:162:29: note: 'NSAlphaFirstBitmapFormat' has been explicitly marked deprecated here static const NSBitmapFormat NSAlphaFirstBitmapFormat API_DEPRECATED_WITH_REPLACEMENT("NSBitmapFormatAlphaFirst", macos(10.5,10.14)) = NSBitmapFormatAlphaFirst; ^ ../../../../../R/src/library/grDevices/src/qdCocoa.m:906:19: warning: 'unlockFocus' is deprecated: first deprecated in macOS 10.14 - To draw, subclass NSView and implement -drawRect:; AppKit's automatic deferred display mechanism will call -drawRect: as necessary to display the view. [-Wdeprecated-declarations] [ci->view unlockFocus]; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSView.h:189:1: note: 'unlockFocus' has been explicitly marked deprecated here - (void)unlockFocus API_DEPRECATED("To draw, subclass NSView and implement -drawRect:; AppKit's automatic deferred display mechanism will call -drawRect: as necessary to display the view.", macos(10.0,10.14)); ^ 29 warnings generated. gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppKit -lz -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/grDevices/libs config.status: creating src/library/grDevices/src/cairo/Makefile making cairoBM.d from ../../../../../../R/src/library/grDevices/src/cairo/cairoBM.c gcc -I. -I../../../../../src/include -I../../../../../../R/src/include -DFRIBIDI_LIB_STATIC -DPCRE2_STATIC -I/opt/R/x86_64/include/pango-1.0 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/fribidi -I/opt/R/x86_64/include/cairo -I/opt/R/x86_64/include -I/opt/R/x86_64/include/pixman-1 -I/opt/R/x86_64/include -I/opt/R/x86_64/include/freetype2 -I/opt/R/x86_64/include/harfbuzz -I/opt/R/x86_64/include/glib-2.0 -I/opt/R/x86_64/lib/glib-2.0/include -I/opt/R/x86_64/include -I/opt/R/x86_64/include/libpng16 -I../../../../../../R/src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c ../../../../../../R/src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/opt/R/x86_64/lib -ltiff -lwebp -lzstd -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -lz -L/opt/R/x86_64/lib -ljpeg -L/opt/R/x86_64/lib -lpng16 -lz -L/opt/R/x86_64/lib -L/opt/X11/lib -L/opt/R/x86_64/lib -lpangocairo-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lpangoft2-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lpango-1.0 -lm -framework CoreFoundation -framework ApplicationServices -lgio-2.0 -lintl -framework Foundation -framework CoreFoundation -framework AppKit -lresolv -lgmodule-2.0 -lintl -lfribidi -lz -lcairo -lz -lXrender -lSM -lICE -lX11 -lXext -lgobject-2.0 -lintl -lffi -lpixman-1 -lfontconfig -lexpat -lfreetype -lbz2 -lharfbuzz -lm -lglib-2.0 -lintl -lm -framework Foundation -framework CoreFoundation -framework AppKit -framework Carbon -lpcre2-8 -lpng16 -lz -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups byte-compiling package 'grDevices' config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/DESCRIPTION building package 'graphics' mkdir ../../../library/graphics mkdir ../../../library/graphics/R config.status: creating src/library/graphics/src/Makefile making init.d from ../../../../../R/src/library/graphics/src/init.c making base.d from ../../../../../R/src/library/graphics/src/base.c making graphics.d from ../../../../../R/src/library/graphics/src/graphics.c making par.d from ../../../../../R/src/library/graphics/src/par.c making plot.d from ../../../../../R/src/library/graphics/src/plot.c making plot3d.d from ../../../../../R/src/library/graphics/src/plot3d.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/init.c -o init.o making stem.d from ../../../../../R/src/library/graphics/src/stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I../../../../../R/src/main -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/graphics/src/stem.c -o stem.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/graphics/libs byte-compiling package 'graphics' config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/DESCRIPTION building package 'stats' mkdir ../../../library/stats mkdir ../../../library/stats/R config.status: creating src/library/stats/src/Makefile making init.d from ../../../../../R/src/library/stats/src/init.c making kmeans.d from ../../../../../R/src/library/stats/src/kmeans.c making ansari.d from ../../../../../R/src/library/stats/src/ansari.c making bandwidths.d from ../../../../../R/src/library/stats/src/bandwidths.c making chisqsim.d from ../../../../../R/src/library/stats/src/chisqsim.c making d2x2xk.d from ../../../../../R/src/library/stats/src/d2x2xk.c making fexact.d from ../../../../../R/src/library/stats/src/fexact.c making kendall.d from ../../../../../R/src/library/stats/src/kendall.c making ks.d from ../../../../../R/src/library/stats/src/ks.c making smooth.d from ../../../../../R/src/library/stats/src/smooth.c making line.d from ../../../../../R/src/library/stats/src/line.c making prho.d from ../../../../../R/src/library/stats/src/prho.c making swilk.d from ../../../../../R/src/library/stats/src/swilk.c making ksmooth.d from ../../../../../R/src/library/stats/src/ksmooth.c making loessc.d from ../../../../../R/src/library/stats/src/loessc.c making monoSpl.d from ../../../../../R/src/library/stats/src/monoSpl.c making isoreg.d from ../../../../../R/src/library/stats/src/isoreg.c making Srunmed.d from ../../../../../R/src/library/stats/src/Srunmed.c making dblcen.d from ../../../../../R/src/library/stats/src/dblcen.c making distance.d from ../../../../../R/src/library/stats/src/distance.c making hclust-utils.d from ../../../../../R/src/library/stats/src/hclust-utils.c making nls.d from ../../../../../R/src/library/stats/src/nls.c making rWishart.d from ../../../../../R/src/library/stats/src/rWishart.c making HoltWinters.d from ../../../../../R/src/library/stats/src/HoltWinters.c making PPsum.d from ../../../../../R/src/library/stats/src/PPsum.c making arima.d from ../../../../../R/src/library/stats/src/arima.c making burg.d from ../../../../../R/src/library/stats/src/burg.c making filter.d from ../../../../../R/src/library/stats/src/filter.c making mAR.d from ../../../../../R/src/library/stats/src/mAR.c making pacf.d from ../../../../../R/src/library/stats/src/pacf.c making starma.d from ../../../../../R/src/library/stats/src/starma.c making port.d from ../../../../../R/src/library/stats/src/port.c making family.d from ../../../../../R/src/library/stats/src/family.c making sbart.d from ../../../../../R/src/library/stats/src/sbart.c making approx.d from ../../../../../R/src/library/stats/src/approx.c making loglin.d from ../../../../../R/src/library/stats/src/loglin.c making lowess.d from ../../../../../R/src/library/stats/src/lowess.c making massdist.d from ../../../../../R/src/library/stats/src/massdist.c making splines.d from ../../../../../R/src/library/stats/src/splines.c making lm.d from ../../../../../R/src/library/stats/src/lm.c making complete_cases.d from ../../../../../R/src/library/stats/src/complete_cases.c making cov.d from ../../../../../R/src/library/stats/src/cov.c making deriv.d from ../../../../../R/src/library/stats/src/deriv.c making fft.d from ../../../../../R/src/library/stats/src/fft.c making fourier.d from ../../../../../R/src/library/stats/src/fourier.c making model.d from ../../../../../R/src/library/stats/src/model.c making optim.d from ../../../../../R/src/library/stats/src/optim.c making optimize.d from ../../../../../R/src/library/stats/src/optimize.c making integrate.d from ../../../../../R/src/library/stats/src/integrate.c making random.d from ../../../../../R/src/library/stats/src/random.c making distn.d from ../../../../../R/src/library/stats/src/distn.c making zeroin.d from ../../../../../R/src/library/stats/src/zeroin.c making rcont.d from ../../../../../R/src/library/stats/src/rcont.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/init.c -o init.o making influence.d from ../../../../../R/src/library/stats/src/influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/influence.c -o influence.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/bsplvd.f -o bsplvd.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/bvalue.f -o bvalue.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/bvalus.f -o bvalus.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/loessf.f -o loessf.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/ppr.f -o ppr.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/qsbart.f -o qsbart.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/sgram.f -o sgram.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/sinerp.f -o sinerp.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/sslvrg.f -o sslvrg.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/stxwx.f -o stxwx.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/hclust.f -o hclust.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/kmns.f -o kmns.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/eureka.f -o eureka.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/stl.f -o stl.o gfortran -fPIC -g -O2 -msse2 -mfpmath=sse -c ../../../../../R/src/library/stats/src/portsrc.f -o portsrc.o gfortran -fPIC -g -O2 -c ../../../../../R/src/library/stats/src/lminfl.f -o lminfl.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -L../../../../lib -lRlapack -L../../../../lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups ld: warning: could not create compact unwind for _splineaa_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _ehg136_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _ehg139_: stack subq instruction is too different from dwarf stack size mkdir ../../../../library/stats/libs byte-compiling package 'stats' config.status: creating src/library/datasets/Makefile config.status: creating src/library/datasets/DESCRIPTION building package 'datasets' mkdir ../../../library/datasets mkdir ../../../library/datasets/data config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/DESCRIPTION building package 'methods' mkdir ../../../library/methods mkdir ../../../library/methods/R config.status: creating src/library/methods/src/Makefile making do_substitute_direct.d from ../../../../../R/src/library/methods/src/do_substitute_direct.c making init.d from ../../../../../R/src/library/methods/src/init.c making methods_list_dispatch.d from ../../../../../R/src/library/methods/src/methods_list_dispatch.c making slot.d from ../../../../../R/src/library/methods/src/slot.c making class_support.d from ../../../../../R/src/library/methods/src/class_support.c making tests.d from ../../../../../R/src/library/methods/src/tests.c making utils.d from ../../../../../R/src/library/methods/src/utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/methods/src/utils.c -o utils.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/methods/libs byte-compiling package 'methods' initializing class and method definitions ... done config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/DESCRIPTION building package 'grid' mkdir ../../../library/grid mkdir ../../../library/grid/doc mkdir ../../../library/grid/R config.status: creating src/library/grid/src/Makefile making clippath.d from ../../../../../R/src/library/grid/src/clippath.c making grid.d from ../../../../../R/src/library/grid/src/grid.c making gpar.d from ../../../../../R/src/library/grid/src/gpar.c making just.d from ../../../../../R/src/library/grid/src/just.c making layout.d from ../../../../../R/src/library/grid/src/layout.c making mask.d from ../../../../../R/src/library/grid/src/mask.c making matrix.d from ../../../../../R/src/library/grid/src/matrix.c making path.d from ../../../../../R/src/library/grid/src/path.c making register.d from ../../../../../R/src/library/grid/src/register.c making state.d from ../../../../../R/src/library/grid/src/state.c making typeset.d from ../../../../../R/src/library/grid/src/typeset.c making unit.d from ../../../../../R/src/library/grid/src/unit.c making util.d from ../../../../../R/src/library/grid/src/util.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/gpar.c -o gpar.o making viewport.d from ../../../../../R/src/library/grid/src/viewport.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/just.c -o just.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/path.c -o path.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/register.c -o register.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/state.c -o state.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/typeset.c -o typeset.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/util.c -o util.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/grid/src/viewport.c -o viewport.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/grid/libs byte-compiling package 'grid' config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/DESCRIPTION building package 'splines' mkdir ../../../library/splines mkdir ../../../library/splines/R config.status: creating src/library/splines/src/Makefile gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/splines/src/splines.c -o splines.o making splines.d from ../../../../../R/src/library/splines/src/splines.c gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o splines.so splines.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/splines/libs byte-compiling package 'splines' config.status: creating src/library/stats4/Makefile config.status: creating src/library/stats4/DESCRIPTION building package 'stats4' mkdir ../../../library/stats4 mkdir ../../../library/stats4/R byte-compiling package 'stats4' config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/DESCRIPTION building package 'tcltk' mkdir ../../../library/tcltk mkdir ../../../library/tcltk/R mkdir ../../../library/tcltk/exec config.status: creating src/library/tcltk/src/Makefile gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/opt/R/x86_64/include -I/opt/R/x86_64/include -I/usr/X11R6/include -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tcltk/src/init.c -o init.o making tcltk.d from ../../../../../R/src/library/tcltk/src/tcltk.c making init.d from ../../../../../R/src/library/tcltk/src/init.c making tcltk_unix.d from ../../../../../R/src/library/tcltk/src/tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/opt/R/x86_64/include -I/opt/R/x86_64/include -I/usr/X11R6/include -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tcltk/src/tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/opt/R/x86_64/include -I/opt/R/x86_64/include -I/usr/X11R6/include -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/opt/R/x86_64/lib -ltcl8.6 -L/opt/R/x86_64/lib -ltk8.6 -L/usr/X11R6/lib -lX11 -Wl,-weak-lXss -lXext -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/tcltk/libs byte-compiling package 'tcltk' config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/DESCRIPTION building package 'parallel' mkdir ../../../library/parallel mkdir ../../../library/parallel/doc mkdir ../../../library/parallel/R config.status: creating src/library/parallel/src/Makefile gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/parallel/src/init.c -o init.o making init.d from ../../../../../R/src/library/parallel/src/init.c making rngstream.d from ../../../../../R/src/library/parallel/src/rngstream.c making fork.d from ../../../../../R/src/library/parallel/src/fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/parallel/src/rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../R/src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -g -O2 -c ../../../../../R/src/library/parallel/src/fork.c -o fork.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups mkdir ../../../../library/parallel/libs byte-compiling package 'parallel' installing parsed NAMESPACE files config.status: creating tests/Makefile make[1]: Nothing to be done for `R'. you should 'make docs' now ... building/updating vignettes for package 'grid' ... configuring Java ... Java interpreter : /usr/bin/java processing 'displaylist.Rnw' Java version : 1.8.0_201 Java home path : /Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c conftest.c -o conftest.o conftest.c:1:10: fatal error: 'jni.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [conftest.o] Error 1 Unable to compile a JNI program JAVA_HOME : /Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /Users/pd/r-devel/BUILD-dist Done. creating doc/NEWS creating doc/NEWS.pdf processing 'frame.Rnw' processing 'grid.Rnw' creating doc/manual/version.texi creating doc/manual/R-FAQ.html mkdir ../../doc/manual/images creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html processing 'grobs.Rnw' installing parsed Rd utils methods graphics stats datasets base grDevices tcltk splines tools grid compiler stats4 parallel building/updating package metadata ... processing 'interactive.Rnw' processing 'locndimn.Rnw' writing package indices config.status: creating src/library/Recommended/Makefile begin installing recommended package MASS begin installing recommended package lattice begin installing recommended package codetools processing 'moveline.Rnw' * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) begin installing recommended package foreign processing 'nonfinite.Rnw' processing 'plotexample.Rnw' * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c R_systat.c -o R_systat.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c Rdbfread.c -o Rdbfread.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c Rdbfwrite.c -o Rdbfwrite.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c SASxport.c -o SASxport.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c avl.c -o avl.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c dbfopen.c -o dbfopen.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c file-handle.c -o file-handle.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c format.c -o format.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c minitab.c -o minitab.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pfm-read.c -o pfm-read.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sfm-read.c -o sfm-read.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c spss.c -o spss.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c stataread.c -o stataread.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) begin installing recommended package KernSmooth * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c MASS.c -o MASS.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c lqs.c -o lqs.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o MASS.so MASS.o lqs.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) begin installing recommended package rpart processing 'rotated.Rnw' * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c threeDplot.c -o threeDplot.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o lattice.so init.o threeDplot.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (lattice) begin installing recommended package class * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using Fortran compiler: 'GNU Fortran (GCC) 12.2.0' using SDK: 'MacOSX13.1.sdk' gfortran -fPIC -g -O2 -c blkest.f -o blkest.o gfortran -fPIC -g -O2 -c cp.f -o cp.o gfortran -fPIC -g -O2 -c dgedi.f -o dgedi.o gfortran -fPIC -g -O2 -c dgefa.f -o dgefa.o gfortran -fPIC -g -O2 -c dgesl.f -o dgesl.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gfortran -fPIC -g -O2 -c linbin.f -o linbin.o gfortran -fPIC -g -O2 -c linbin2D.f -o linbin2D.o gfortran -fPIC -g -O2 -c locpoly.f -o locpoly.o gfortran -fPIC -g -O2 -c rlbin.f -o rlbin.o gfortran -fPIC -g -O2 -c sdiag.f -o sdiag.o gfortran -fPIC -g -O2 -c sstdiag.f -o sstdiag.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/Users/pd/r-devel/BUILD-dist/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) begin installing recommended package nnet processing 'saveload.Rnw' * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c class.c -o class.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o class.so class.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) begin installing recommended package spatial * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c nnet.c -o nnet.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o nnet.so nnet.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) begin installing recommended package Matrix processing 'sharing.Rnw' * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c anova.c -o anova.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c anovapred.c -o anovapred.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c branch.c -o branch.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c bsplit.c -o bsplit.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c choose_surg.c -o choose_surg.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c fix_cp.c -o fix_cp.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c free_tree.c -o free_tree.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c gini.c -o gini.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c graycode.c -o graycode.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c insert_split.c -o insert_split.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c make_cp_list.c -o make_cp_list.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c make_cp_table.c -o make_cp_table.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c mysort.c -o mysort.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c nodesplit.c -o nodesplit.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c partition.c -o partition.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c poisson.c -o poisson.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pred_rpart.c -o pred_rpart.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c print_tree.c -o print_tree.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rpart.c -o rpart.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rpart_callback.c -o rpart_callback.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rpartexp.c -o rpartexp.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rpartexp2.c -o rpartexp2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rpcountup.c -o rpcountup.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rpmatrix.c -o rpmatrix.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rundown.c -o rundown.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c rundown2.c -o rundown2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c surrogate.c -o surrogate.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c usersplit.c -o usersplit.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c xpred.c -o xpred.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c xval.c -o xval.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) begin installing recommended package nlme * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c krc.c -o krc.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pps.c -o pps.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o spatial.so init.o krc.o pps.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) begin installing recommended package cluster processing 'viewports.Rnw' * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using Fortran compiler: 'GNU Fortran (GCC) 12.2.0' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c clara.c -o clara.o gfortran -fPIC -g -O2 -c daisy.f -o daisy.o gfortran -fPIC -g -O2 -c dysta.f -o dysta.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c fanny.c -o fanny.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c mona.c -o mona.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pam.c -o pam.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sildist.c -o sildist.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c spannel.c -o spannel.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c twins.c -o twins.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) building/updating vignettes for package 'parallel' ... processing 'parallel.Rnw' building/updating vignettes for package 'utils' ... processing 'Sweave.Rnw' * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using Fortran compiler: 'GNU Fortran (GCC) 12.2.0' using SDK: 'MacOSX13.1.sdk' gfortran -fPIC -g -O2 -c chol.f -o chol.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c corStruct.c -o corStruct.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c gnls.c -o gnls.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c matrix.c -o matrix.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c nlOptimizer.c -o nlOptimizer.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c nlme.c -o nlme.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c nlmefit.c -o nlmefit.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pdMat.c -o pdMat.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pythag.c -o pythag.o gfortran -fPIC -g -O2 -c rs.f -o rs.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) building/updating vignettes for package 'stats' ... processing 'reshape.Rnw' * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c Csparse.c -o Csparse.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c attrib.c -o attrib.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c bind.c -o bind.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c cholmod-common.c -o cholmod-common.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c cholmod-etc.c -o cholmod-etc.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c coerce.c -o coerce.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c cs-etc.c -o cs-etc.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c dense.c -o dense.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c determinant.c -o determinant.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c expm.c -o expm.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c factor.c -o factor.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c idz.c -o idz.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c kappa.c -o kappa.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c matmult.c -o matmult.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c objects.c -o objects.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c perm.c -o perm.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c solve.c -o solve.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c sparse.c -o sparse.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c subassign.c -o subassign.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c subscript.c -o subscript.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c utils-R.c -o utils-R.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c utils.c -o utils.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c validity.c -o validity.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fPIC -g -O2 -c vector.c -o vector.o cd SuiteSparse/CHOLMOD && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Check/cholmod_check.c -o Check/cholmod_check.o cd SuiteSparse/CCOLAMD && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/ccolamd.c -o Source/ccolamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/ccolamd_l.c -o Source/ccolamd_l.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Check/cholmod_l_check.c -o Check/cholmod_l_check.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/ccolamd_version.c -o Source/ccolamd_version.o rm -f CCOLAMD.a ar -cr CCOLAMD.a Source/ccolamd.o Source/ccolamd_l.o Source/ccolamd_version.o ranlib CCOLAMD.a gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Check/cholmod_read.c -o Check/cholmod_read.o cd SuiteSparse/CAMD && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_1.c -o Source/camd_1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l1.c -o Source/camd_l1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_2.c -o Source/camd_2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Check/cholmod_l_read.c -o Check/cholmod_l_read.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Check/cholmod_write.c -o Check/cholmod_write.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l2.c -o Source/camd_l2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Check/cholmod_l_write.c -o Check/cholmod_l_write.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_amd.c -o Cholesky/cholmod_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_aat.c -o Source/camd_aat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_amd.c -o Cholesky/cholmod_l_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_analyze.c -o Cholesky/cholmod_analyze.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_aat.c -o Source/camd_l_aat.o cd SuiteSparse/COLAMD && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/colamd.c -o Source/colamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_control.c -o Source/camd_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_control.c -o Source/camd_l_control.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_analyze.c -o Cholesky/cholmod_l_analyze.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_defaults.c -o Source/camd_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_defaults.c -o Source/camd_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/colamd_l.c -o Source/colamd_l.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_colamd.c -o Cholesky/cholmod_colamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_dump.c -o Source/camd_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_dump.c -o Source/camd_l_dump.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_colamd.c -o Cholesky/cholmod_l_colamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_info.c -o Source/camd_info.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_etree.c -o Cholesky/cholmod_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_info.c -o Source/camd_l_info.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_etree.c -o Cholesky/cholmod_l_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_order.c -o Source/camd_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/colamd_version.c -o Source/colamd_version.o rm -f COLAMD.a ar -cr COLAMD.a Source/colamd.o Source/colamd_l.o Source/colamd_version.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_order.c -o Source/camd_l_order.o ranlib COLAMD.a gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_factorize.c -o Cholesky/cholmod_factorize.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_postorder.c -o Source/camd_postorder.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_factorize.c -o Cholesky/cholmod_l_factorize.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_postorder.c -o Source/camd_l_postorder.o cd SuiteSparse/AMD && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_1.c -o Source/amd_1.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_postorder.c -o Cholesky/cholmod_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_preprocess.c -o Source/camd_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l1.c -o Source/amd_l1.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_postorder.c -o Cholesky/cholmod_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_preprocess.c -o Source/camd_l_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_2.c -o Source/amd_2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_rcond.c -o Cholesky/cholmod_rcond.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_valid.c -o Source/camd_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_l_valid.c -o Source/camd_l_valid.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_rcond.c -o Cholesky/cholmod_l_rcond.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/camd_version.c -o Source/camd_version.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l2.c -o Source/amd_l2.o rm -f CAMD.a ar -cr CAMD.a Source/camd_1.o Source/camd_l1.o Source/camd_2.o Source/camd_l2.o Source/camd_aat.o Source/camd_l_aat.o Source/camd_control.o Source/camd_l_control.o Source/camd_defaults.o Source/camd_l_defaults.o Source/camd_dump.o Source/camd_l_dump.o Source/camd_info.o Source/camd_l_info.o Source/camd_order.o Source/camd_l_order.o Source/camd_postorder.o Source/camd_l_postorder.o Source/camd_preprocess.o Source/camd_l_preprocess.o Source/camd_valid.o Source/camd_l_valid.o Source/camd_version.o /Library/Developer/CommandLineTools/usr/bin/ranlib: file: CAMD.a(camd_dump.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: CAMD.a(camd_l_dump.o) has no symbols ranlib CAMD.a gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_resymbol.c -o Cholesky/cholmod_resymbol.o /Library/Developer/CommandLineTools/usr/bin/ranlib: file: CAMD.a(camd_dump.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: CAMD.a(camd_l_dump.o) has no symbols gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_aat.c -o Source/amd_aat.o cd SuiteSparse/CXSparse && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_add.c -o Source/cs_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_aat.c -o Source/amd_l_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_add.c -o Source/cs_dl_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_control.c -o Source/amd_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_add.c -o Source/cs_ci_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_control.c -o Source/amd_l_control.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_resymbol.c -o Cholesky/cholmod_l_resymbol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_defaults.c -o Source/amd_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_add.c -o Source/cs_cl_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_defaults.c -o Source/amd_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_amd.c -o Source/cs_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_dump.c -o Source/amd_dump.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_rowcolcounts.c -o Cholesky/cholmod_rowcolcounts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_dump.c -o Source/amd_l_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_info.c -o Source/amd_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_amd.c -o Source/cs_dl_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_rowcolcounts.c -o Cholesky/cholmod_l_rowcolcounts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_info.c -o Source/amd_l_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_order.c -o Source/amd_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_amd.c -o Source/cs_ci_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_rowfac.c -o Cholesky/cholmod_rowfac.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_order.c -o Source/amd_l_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_post_tree.c -o Source/amd_post_tree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_amd.c -o Source/cs_cl_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_post_tree.c -o Source/amd_l_post_tree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_postorder.c -o Source/amd_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_postorder.c -o Source/amd_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_chol.c -o Source/cs_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_preprocess.c -o Source/amd_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_chol.c -o Source/cs_dl_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_preprocess.c -o Source/amd_l_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_chol.c -o Source/cs_ci_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_valid.c -o Source/amd_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_chol.c -o Source/cs_cl_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_l_valid.c -o Source/amd_l_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cholsol.c -o Source/cs_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/amd_version.c -o Source/amd_version.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_cholsol.c -o Source/cs_dl_cholsol.o rm -f AMD.a ar -cr AMD.a Source/amd_1.o Source/amd_l1.o Source/amd_2.o Source/amd_l2.o Source/amd_aat.o Source/amd_l_aat.o Source/amd_control.o Source/amd_l_control.o Source/amd_defaults.o Source/amd_l_defaults.o Source/amd_dump.o Source/amd_l_dump.o Source/amd_info.o Source/amd_l_info.o Source/amd_order.o Source/amd_l_order.o Source/amd_post_tree.o Source/amd_l_post_tree.o Source/amd_postorder.o Source/amd_l_postorder.o Source/amd_preprocess.o Source/amd_l_preprocess.o Source/amd_valid.o Source/amd_l_valid.o Source/amd_version.o /Library/Developer/CommandLineTools/usr/bin/ranlib: file: AMD.a(amd_dump.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: AMD.a(amd_l_dump.o) has no symbols ranlib AMD.a /Library/Developer/CommandLineTools/usr/bin/ranlib: file: AMD.a(amd_dump.o) has no symbols /Library/Developer/CommandLineTools/usr/bin/ranlib: file: AMD.a(amd_l_dump.o) has no symbols gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_rowfac.c -o Cholesky/cholmod_l_rowfac.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_cholsol.c -o Source/cs_ci_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_cholsol.c -o Source/cs_cl_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_compress.c -o Source/cs_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_compress.c -o Source/cs_dl_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_compress.c -o Source/cs_ci_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_compress.c -o Source/cs_cl_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_convert.c -o Source/cs_convert.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_counts.c -o Source/cs_counts.o cd SuiteSparse/SuiteSparse_config && /Library/Developer/CommandLineTools/usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/Users/pd/r-devel/BUILD-dist/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-g -O2 -fPIC " AR="ar" RANLIB="ranlib" gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_counts.c -o Source/cs_dl_counts.o gcc -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c SuiteSparse_config.c -o SuiteSparse_config.o rm -f SuiteSparse_config.a ar -cr SuiteSparse_config.a SuiteSparse_config.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_counts.c -o Source/cs_ci_counts.o ranlib SuiteSparse_config.a gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_counts.c -o Source/cs_cl_counts.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_solve.c -o Cholesky/cholmod_solve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cumsum.c -o Source/cs_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_cumsum.c -o Source/cs_dl_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_cumsum.c -o Source/cs_ci_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_cumsum.c -o Source/cs_cl_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dfs.c -o Source/cs_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_dfs.c -o Source/cs_dl_dfs.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_solve.c -o Cholesky/cholmod_l_solve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_dfs.c -o Source/cs_ci_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_dfs.c -o Source/cs_cl_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dmperm.c -o Source/cs_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_dmperm.c -o Source/cs_dl_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_dmperm.c -o Source/cs_ci_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_dmperm.c -o Source/cs_cl_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_droptol.c -o Source/cs_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_droptol.c -o Source/cs_dl_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_droptol.c -o Source/cs_ci_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_droptol.c -o Source/cs_cl_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dropzeros.c -o Source/cs_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_dropzeros.c -o Source/cs_dl_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_dropzeros.c -o Source/cs_ci_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_dropzeros.c -o Source/cs_cl_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dupl.c -o Source/cs_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_dupl.c -o Source/cs_dl_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_dupl.c -o Source/cs_ci_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_dupl.c -o Source/cs_cl_dupl.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_spsolve.c -o Cholesky/cholmod_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_entry.c -o Source/cs_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_entry.c -o Source/cs_dl_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_entry.c -o Source/cs_ci_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_entry.c -o Source/cs_cl_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ereach.c -o Source/cs_ereach.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Cholesky/cholmod_l_spsolve.c -o Cholesky/cholmod_l_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_aat.c -o Utility/cholmod_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_ereach.c -o Source/cs_dl_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_ereach.c -o Source/cs_ci_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_ereach.c -o Source/cs_cl_ereach.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_aat.c -o Utility/cholmod_l_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_etree.c -o Source/cs_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_add.c -o Utility/cholmod_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_etree.c -o Source/cs_dl_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_etree.c -o Source/cs_ci_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_add.c -o Utility/cholmod_l_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_etree.c -o Source/cs_cl_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_add_size_t.c -o Utility/cholmod_add_size_t.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_fkeep.c -o Source/cs_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_fkeep.c -o Source/cs_dl_fkeep.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_add_size_t.c -o Utility/cholmod_l_add_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_alloc_factor.c -o Utility/cholmod_alloc_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_fkeep.c -o Source/cs_ci_fkeep.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_alloc_factor.c -o Utility/cholmod_l_alloc_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_fkeep.c -o Source/cs_cl_fkeep.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_alloc_work.c -o Utility/cholmod_alloc_work.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_gaxpy.c -o Source/cs_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_alloc_work.c -o Utility/cholmod_l_alloc_work.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_gaxpy.c -o Source/cs_dl_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_allocate_dense.c -o Utility/cholmod_allocate_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_gaxpy.c -o Source/cs_ci_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_allocate_dense.c -o Utility/cholmod_l_allocate_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_gaxpy.c -o Source/cs_cl_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_allocate_factor.c -o Utility/cholmod_allocate_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_happly.c -o Source/cs_happly.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_allocate_factor.c -o Utility/cholmod_l_allocate_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_happly.c -o Source/cs_dl_happly.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_allocate_sparse.c -o Utility/cholmod_allocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_happly.c -o Source/cs_ci_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_happly.c -o Source/cs_cl_happly.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_allocate_sparse.c -o Utility/cholmod_l_allocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_allocate_triplet.c -o Utility/cholmod_allocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_house.c -o Source/cs_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_house.c -o Source/cs_dl_house.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_allocate_triplet.c -o Utility/cholmod_l_allocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_house.c -o Source/cs_ci_house.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_allocate_work.c -o Utility/cholmod_allocate_work.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_house.c -o Source/cs_cl_house.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_allocate_work.c -o Utility/cholmod_l_allocate_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_band.c -o Utility/cholmod_band.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ipvec.c -o Source/cs_ipvec.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_band.c -o Utility/cholmod_l_band.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_ipvec.c -o Source/cs_dl_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_ipvec.c -o Source/cs_ci_ipvec.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_band_nnz.c -o Utility/cholmod_band_nnz.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_ipvec.c -o Source/cs_cl_ipvec.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_band_nnz.c -o Utility/cholmod_l_band_nnz.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_leaf.c -o Source/cs_leaf.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_calloc.c -o Utility/cholmod_calloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_leaf.c -o Source/cs_dl_leaf.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_calloc.c -o Utility/cholmod_l_calloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_leaf.c -o Source/cs_ci_leaf.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_change_factor.c -o Utility/cholmod_change_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_leaf.c -o Source/cs_cl_leaf.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_change_factor.c -o Utility/cholmod_l_change_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_load.c -o Source/cs_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_load.c -o Source/cs_dl_load.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_clear_flag.c -o Utility/cholmod_clear_flag.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_load.c -o Source/cs_ci_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_load.c -o Source/cs_cl_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_lsolve.c -o Source/cs_lsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_clear_flag.c -o Utility/cholmod_l_clear_flag.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_lsolve.c -o Source/cs_dl_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_lsolve.c -o Source/cs_ci_lsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_copy.c -o Utility/cholmod_copy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_lsolve.c -o Source/cs_cl_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ltsolve.c -o Source/cs_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_ltsolve.c -o Source/cs_dl_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_ltsolve.c -o Source/cs_ci_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_copy.c -o Utility/cholmod_l_copy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_ltsolve.c -o Source/cs_cl_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_lu.c -o Source/cs_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_lu.c -o Source/cs_dl_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_lu.c -o Source/cs_ci_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_lu.c -o Source/cs_cl_lu.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_copy_dense.c -o Utility/cholmod_copy_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_lusol.c -o Source/cs_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_lusol.c -o Source/cs_dl_lusol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_copy_dense.c -o Utility/cholmod_l_copy_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_lusol.c -o Source/cs_ci_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_lusol.c -o Source/cs_cl_lusol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_copy_dense2.c -o Utility/cholmod_copy_dense2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_malloc.c -o Source/cs_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_malloc.c -o Source/cs_dl_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_malloc.c -o Source/cs_ci_malloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_copy_dense2.c -o Utility/cholmod_l_copy_dense2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_malloc.c -o Source/cs_cl_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_maxtrans.c -o Source/cs_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_maxtrans.c -o Source/cs_dl_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_maxtrans.c -o Source/cs_ci_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_copy_factor.c -o Utility/cholmod_copy_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_copy_factor.c -o Utility/cholmod_l_copy_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_copy_sparse.c -o Utility/cholmod_copy_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_maxtrans.c -o Source/cs_cl_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_copy_sparse.c -o Utility/cholmod_l_copy_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_multiply.c -o Source/cs_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_multiply.c -o Source/cs_dl_multiply.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_copy_triplet.c -o Utility/cholmod_copy_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_copy_triplet.c -o Utility/cholmod_l_copy_triplet.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_multiply.c -o Source/cs_ci_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_multiply.c -o Source/cs_cl_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_norm.c -o Source/cs_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_cumsum.c -o Utility/cholmod_cumsum.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_cumsum.c -o Utility/cholmod_l_cumsum.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_dbound.c -o Utility/cholmod_dbound.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_norm.c -o Source/cs_dl_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_norm.c -o Source/cs_ci_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_norm.c -o Source/cs_cl_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_dbound.c -o Utility/cholmod_l_dbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_defaults.c -o Utility/cholmod_defaults.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_defaults.c -o Utility/cholmod_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_permute.c -o Source/cs_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_permute.c -o Source/cs_dl_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_permute.c -o Source/cs_ci_permute.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_dense_nnz.c -o Utility/cholmod_dense_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_dense_nnz.c -o Utility/cholmod_l_dense_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_dense_to_sparse.c -o Utility/cholmod_dense_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_permute.c -o Source/cs_cl_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_pinv.c -o Source/cs_pinv.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_dense_to_sparse.c -o Utility/cholmod_l_dense_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_pinv.c -o Source/cs_dl_pinv.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_divcomplex.c -o Utility/cholmod_divcomplex.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_pinv.c -o Source/cs_ci_pinv.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_divcomplex.c -o Utility/cholmod_l_divcomplex.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_pinv.c -o Source/cs_cl_pinv.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_ensure_dense.c -o Utility/cholmod_ensure_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_post.c -o Source/cs_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_post.c -o Source/cs_dl_post.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_ensure_dense.c -o Utility/cholmod_l_ensure_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_post.c -o Source/cs_ci_post.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_error.c -o Utility/cholmod_error.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_post.c -o Source/cs_cl_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_print.c -o Source/cs_print.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_error.c -o Utility/cholmod_l_error.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_eye.c -o Utility/cholmod_eye.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_print.c -o Source/cs_dl_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_print.c -o Source/cs_ci_print.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_eye.c -o Utility/cholmod_l_eye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_factor_to_sparse.c -o Utility/cholmod_factor_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_print.c -o Source/cs_cl_print.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_factor_to_sparse.c -o Utility/cholmod_l_factor_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_pvec.c -o Source/cs_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_pvec.c -o Source/cs_dl_pvec.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_finish.c -o Utility/cholmod_finish.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_pvec.c -o Source/cs_ci_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_pvec.c -o Source/cs_cl_pvec.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_finish.c -o Utility/cholmod_l_finish.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_qr.c -o Source/cs_qr.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_free.c -o Utility/cholmod_free.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_free.c -o Utility/cholmod_l_free.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_qr.c -o Source/cs_dl_qr.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_free_dense.c -o Utility/cholmod_free_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_qr.c -o Source/cs_ci_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_qr.c -o Source/cs_cl_qr.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_free_dense.c -o Utility/cholmod_l_free_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_qrsol.c -o Source/cs_qrsol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_free_factor.c -o Utility/cholmod_free_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_free_factor.c -o Utility/cholmod_l_free_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_qrsol.c -o Source/cs_dl_qrsol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_free_sparse.c -o Utility/cholmod_free_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_qrsol.c -o Source/cs_ci_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_qrsol.c -o Source/cs_cl_qrsol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_free_sparse.c -o Utility/cholmod_l_free_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_randperm.c -o Source/cs_randperm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_free_triplet.c -o Utility/cholmod_free_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_free_triplet.c -o Utility/cholmod_l_free_triplet.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_randperm.c -o Source/cs_dl_randperm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_free_work.c -o Utility/cholmod_free_work.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_randperm.c -o Source/cs_ci_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_randperm.c -o Source/cs_cl_randperm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_free_work.c -o Utility/cholmod_l_free_work.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_reach.c -o Source/cs_reach.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_hypot.c -o Utility/cholmod_hypot.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_hypot.c -o Utility/cholmod_l_hypot.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_reach.c -o Source/cs_dl_reach.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_malloc.c -o Utility/cholmod_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_reach.c -o Source/cs_ci_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_reach.c -o Source/cs_cl_reach.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_malloc.c -o Utility/cholmod_l_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_scatter.c -o Source/cs_scatter.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_maxrank.c -o Utility/cholmod_maxrank.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_maxrank.c -o Utility/cholmod_l_maxrank.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_scatter.c -o Source/cs_dl_scatter.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_memdebug.c -o Utility/cholmod_memdebug.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_scatter.c -o Source/cs_ci_scatter.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_mult_size_t.c -o Utility/cholmod_mult_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_mult_size_t.c -o Utility/cholmod_l_mult_size_t.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_scatter.c -o Source/cs_cl_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_scc.c -o Source/cs_scc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_mult_uint64_t.c -o Utility/cholmod_mult_uint64_t.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_scc.c -o Source/cs_dl_scc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_nnz.c -o Utility/cholmod_nnz.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_scc.c -o Source/cs_ci_scc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_nnz.c -o Utility/cholmod_l_nnz.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_scc.c -o Source/cs_cl_scc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_ones.c -o Utility/cholmod_ones.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_ones.c -o Utility/cholmod_l_ones.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_schol.c -o Source/cs_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_schol.c -o Source/cs_dl_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_schol.c -o Source/cs_ci_schol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_pack_factor.c -o Utility/cholmod_pack_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_pack_factor.c -o Utility/cholmod_l_pack_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_schol.c -o Source/cs_cl_schol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_ptranspose.c -o Utility/cholmod_ptranspose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_spsolve.c -o Source/cs_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_spsolve.c -o Source/cs_dl_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_spsolve.c -o Source/cs_ci_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_ptranspose.c -o Utility/cholmod_l_ptranspose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_spsolve.c -o Source/cs_cl_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_realloc.c -o Utility/cholmod_realloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_realloc.c -o Utility/cholmod_l_realloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_realloc_multiple.c -o Utility/cholmod_realloc_multiple.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_sqr.c -o Source/cs_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_sqr.c -o Source/cs_dl_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_sqr.c -o Source/cs_ci_sqr.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_realloc_multiple.c -o Utility/cholmod_l_realloc_multiple.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_sqr.c -o Source/cs_cl_sqr.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_reallocate_column.c -o Utility/cholmod_reallocate_column.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_reallocate_column.c -o Utility/cholmod_l_reallocate_column.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_symperm.c -o Source/cs_symperm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_reallocate_factor.c -o Utility/cholmod_reallocate_factor.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_symperm.c -o Source/cs_dl_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_symperm.c -o Source/cs_ci_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_symperm.c -o Source/cs_cl_symperm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_reallocate_factor.c -o Utility/cholmod_l_reallocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_reallocate_sparse.c -o Utility/cholmod_reallocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_reallocate_sparse.c -o Utility/cholmod_l_reallocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_tdfs.c -o Source/cs_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_tdfs.c -o Source/cs_dl_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_tdfs.c -o Source/cs_ci_tdfs.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_reallocate_triplet.c -o Utility/cholmod_reallocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_reallocate_triplet.c -o Utility/cholmod_l_reallocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_sbound.c -o Utility/cholmod_sbound.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_tdfs.c -o Source/cs_cl_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_transpose.c -o Source/cs_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_transpose.c -o Source/cs_dl_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_sbound.c -o Utility/cholmod_l_sbound.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_transpose.c -o Source/cs_ci_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_score_comp.c -o Utility/cholmod_score_comp.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_score_comp.c -o Utility/cholmod_l_score_comp.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_transpose.c -o Source/cs_cl_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_set_empty.c -o Utility/cholmod_set_empty.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_set_empty.c -o Utility/cholmod_l_set_empty.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_updown.c -o Source/cs_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_sort.c -o Utility/cholmod_sort.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_updown.c -o Source/cs_dl_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_updown.c -o Source/cs_ci_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_sort.c -o Utility/cholmod_l_sort.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_sparse_to_dense.c -o Utility/cholmod_sparse_to_dense.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_updown.c -o Source/cs_cl_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_usolve.c -o Source/cs_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_usolve.c -o Source/cs_dl_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_usolve.c -o Source/cs_ci_usolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_sparse_to_dense.c -o Utility/cholmod_l_sparse_to_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_sparse_to_triplet.c -o Utility/cholmod_sparse_to_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_sparse_to_triplet.c -o Utility/cholmod_l_sparse_to_triplet.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_usolve.c -o Source/cs_cl_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_util.c -o Source/cs_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_util.c -o Source/cs_dl_util.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_speye.c -o Utility/cholmod_speye.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_util.c -o Source/cs_ci_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_util.c -o Source/cs_cl_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_utsolve.c -o Source/cs_utsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_speye.c -o Utility/cholmod_l_speye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_spzeros.c -o Utility/cholmod_spzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_dl_utsolve.c -o Source/cs_dl_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_ci_utsolve.c -o Source/cs_ci_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cs_cl_utsolve.c -o Source/cs_cl_utsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_spzeros.c -o Utility/cholmod_l_spzeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_start.c -o Utility/cholmod_start.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Source/cxsparse_version.c -o Source/cxsparse_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_start.c -o Utility/cholmod_l_start.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_transpose.c -o Utility/cholmod_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_transpose.c -o Utility/cholmod_l_transpose.o rm -f CXSparse.a ar -cr CXSparse.a Source/cs_add.o Source/cs_dl_add.o Source/cs_ci_add.o Source/cs_cl_add.o Source/cs_amd.o Source/cs_dl_amd.o Source/cs_ci_amd.o Source/cs_cl_amd.o Source/cs_chol.o Source/cs_dl_chol.o Source/cs_ci_chol.o Source/cs_cl_chol.o Source/cs_cholsol.o Source/cs_dl_cholsol.o Source/cs_ci_cholsol.o Source/cs_cl_cholsol.o Source/cs_compress.o Source/cs_dl_compress.o Source/cs_ci_compress.o Source/cs_cl_compress.o Source/cs_convert.o Source/cs_counts.o Source/cs_dl_counts.o Source/cs_ci_counts.o Source/cs_cl_counts.o Source/cs_cumsum.o Source/cs_dl_cumsum.o Source/cs_ci_cumsum.o Source/cs_cl_cumsum.o Source/cs_dfs.o Source/cs_dl_dfs.o Source/cs_ci_dfs.o Source/cs_cl_dfs.o Source/cs_dmperm.o Source/cs_dl_dmperm.o Source/cs_ci_dmperm.o Source/cs_cl_dmperm.o Source/cs_droptol.o Source/cs_dl_droptol.o Source/cs_ci_droptol.o Source/cs_cl_droptol.o Source/cs_dropzeros.o Source/cs_dl_dropzeros.o Source/cs_ci_dropzeros.o Source/cs_cl_dropzeros.o Source/cs_dupl.o Source/cs_dl_dupl.o Source/cs_ci_dupl.o Source/cs_cl_dupl.o Source/cs_entry.o Source/cs_dl_entry.o Source/cs_ci_entry.o Source/cs_cl_entry.o Source/cs_ereach.o Source/cs_dl_ereach.o Source/cs_ci_ereach.o Source/cs_cl_ereach.o Source/cs_etree.o Source/cs_dl_etree.o Source/cs_ci_etree.o Source/cs_cl_etree.o Source/cs_fkeep.o Source/cs_dl_fkeep.o Source/cs_ci_fkeep.o Source/cs_cl_fkeep.o Source/cs_gaxpy.o Source/cs_dl_gaxpy.o Source/cs_ci_gaxpy.o Source/cs_cl_gaxpy.o Source/cs_happly.o Source/cs_dl_happly.o Source/cs_ci_happly.o Source/cs_cl_happly.o Source/cs_house.o Source/cs_dl_house.o Source/cs_ci_house.o Source/cs_cl_house.o Source/cs_ipvec.o Source/cs_dl_ipvec.o Source/cs_ci_ipvec.o Source/cs_cl_ipvec.o Source/cs_leaf.o Source/cs_dl_leaf.o Source/cs_ci_leaf.o Source/cs_cl_leaf.o Source/cs_load.o Source/cs_dl_load.o Source/cs_ci_load.o Source/cs_cl_load.o Source/cs_lsolve.o Source/cs_dl_lsolve.o Source/cs_ci_lsolve.o Source/cs_cl_lsolve.o Source/cs_ltsolve.o Source/cs_dl_ltsolve.o Source/cs_ci_ltsolve.o Source/cs_cl_ltsolve.o Source/cs_lu.o Source/cs_dl_lu.o Source/cs_ci_lu.o Source/cs_cl_lu.o Source/cs_lusol.o Source/cs_dl_lusol.o Source/cs_ci_lusol.o Source/cs_cl_lusol.o Source/cs_malloc.o Source/cs_dl_malloc.o Source/cs_ci_malloc.o Source/cs_cl_malloc.o Source/cs_maxtrans.o Source/cs_dl_maxtrans.o Source/cs_ci_maxtrans.o Source/cs_cl_maxtrans.o Source/cs_multiply.o Source/cs_dl_multiply.o Source/cs_ci_multiply.o Source/cs_cl_multiply.o Source/cs_norm.o Source/cs_dl_norm.o Source/cs_ci_norm.o Source/cs_cl_norm.o Source/cs_permute.o Source/cs_dl_permute.o Source/cs_ci_permute.o Source/cs_cl_permute.o Source/cs_pinv.o Source/cs_dl_pinv.o Source/cs_ci_pinv.o Source/cs_cl_pinv.o Source/cs_post.o Source/cs_dl_post.o Source/cs_ci_post.o Source/cs_cl_post.o Source/cs_print.o Source/cs_dl_print.o Source/cs_ci_print.o Source/cs_cl_print.o Source/cs_pvec.o Source/cs_dl_pvec.o Source/cs_ci_pvec.o Source/cs_cl_pvec.o Source/cs_qr.o Source/cs_dl_qr.o Source/cs_ci_qr.o Source/cs_cl_qr.o Source/cs_qrsol.o Source/cs_dl_qrsol.o Source/cs_ci_qrsol.o Source/cs_cl_qrsol.o Source/cs_randperm.o Source/cs_dl_randperm.o Source/cs_ci_randperm.o Source/cs_cl_randperm.o Source/cs_reach.o Source/cs_dl_reach.o Source/cs_ci_reach.o Source/cs_cl_reach.o Source/cs_scatter.o Source/cs_dl_scatter.o Source/cs_ci_scatter.o Source/cs_cl_scatter.o Source/cs_scc.o Source/cs_dl_scc.o Source/cs_ci_scc.o Source/cs_cl_scc.o Source/cs_schol.o Source/cs_dl_schol.o Source/cs_ci_schol.o Source/cs_cl_schol.o Source/cs_spsolve.o Source/cs_dl_spsolve.o Source/cs_ci_spsolve.o Source/cs_cl_spsolve.o Source/cs_sqr.o Source/cs_dl_sqr.o Source/cs_ci_sqr.o Source/cs_cl_sqr.o Source/cs_symperm.o Source/cs_dl_symperm.o Source/cs_ci_symperm.o Source/cs_cl_symperm.o Source/cs_tdfs.o Source/cs_dl_tdfs.o Source/cs_ci_tdfs.o Source/cs_cl_tdfs.o Source/cs_transpose.o Source/cs_dl_transpose.o Source/cs_ci_transpose.o Source/cs_cl_transpose.o Source/cs_updown.o Source/cs_dl_updown.o Source/cs_ci_updown.o Source/cs_cl_updown.o Source/cs_usolve.o Source/cs_dl_usolve.o Source/cs_ci_usolve.o Source/cs_cl_usolve.o Source/cs_util.o Source/cs_dl_util.o Source/cs_ci_util.o Source/cs_cl_util.o Source/cs_utsolve.o Source/cs_dl_utsolve.o Source/cs_ci_utsolve.o Source/cs_cl_utsolve.o Source/cxsparse_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_transpose_sym.c -o Utility/cholmod_transpose_sym.o ranlib CXSparse.a gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_transpose_sym.c -o Utility/cholmod_l_transpose_sym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_transpose_unsym.c -o Utility/cholmod_transpose_unsym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_transpose_unsym.c -o Utility/cholmod_l_transpose_unsym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_triplet_to_sparse.c -o Utility/cholmod_triplet_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_triplet_to_sparse.c -o Utility/cholmod_l_triplet_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_version.c -o Utility/cholmod_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_version.c -o Utility/cholmod_l_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_xtype.c -o Utility/cholmod_xtype.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_xtype.c -o Utility/cholmod_l_xtype.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_zeros.c -o Utility/cholmod_zeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Utility/cholmod_l_zeros.c -o Utility/cholmod_l_zeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_drop.c -o MatrixOps/cholmod_drop.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_drop.c -o MatrixOps/cholmod_l_drop.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_horzcat.c -o MatrixOps/cholmod_horzcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_horzcat.c -o MatrixOps/cholmod_l_horzcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_norm.c -o MatrixOps/cholmod_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_norm.c -o MatrixOps/cholmod_l_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_scale.c -o MatrixOps/cholmod_scale.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_scale.c -o MatrixOps/cholmod_l_scale.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_sdmult.c -o MatrixOps/cholmod_sdmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_sdmult.c -o MatrixOps/cholmod_l_sdmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_ssmult.c -o MatrixOps/cholmod_ssmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_ssmult.c -o MatrixOps/cholmod_l_ssmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_submatrix.c -o MatrixOps/cholmod_submatrix.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_submatrix.c -o MatrixOps/cholmod_l_submatrix.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_symmetry.c -o MatrixOps/cholmod_symmetry.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_symmetry.c -o MatrixOps/cholmod_l_symmetry.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_vertcat.c -o MatrixOps/cholmod_vertcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c MatrixOps/cholmod_l_vertcat.c -o MatrixOps/cholmod_l_vertcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Modify/cholmod_rowadd.c -o Modify/cholmod_rowadd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Modify/cholmod_l_rowadd.c -o Modify/cholmod_l_rowadd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Modify/cholmod_rowdel.c -o Modify/cholmod_rowdel.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Modify/cholmod_l_rowdel.c -o Modify/cholmod_l_rowdel.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Modify/cholmod_updown.c -o Modify/cholmod_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Modify/cholmod_l_updown.c -o Modify/cholmod_l_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_camd.c -o Partition/cholmod_camd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_l_camd.c -o Partition/cholmod_l_camd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_ccolamd.c -o Partition/cholmod_ccolamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_l_ccolamd.c -o Partition/cholmod_l_ccolamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_csymamd.c -o Partition/cholmod_csymamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_l_csymamd.c -o Partition/cholmod_l_csymamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_metis.c -o Partition/cholmod_metis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_l_metis.c -o Partition/cholmod_l_metis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_metis_wrapper.c -o Partition/cholmod_metis_wrapper.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_nesdis.c -o Partition/cholmod_nesdis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Partition/cholmod_l_nesdis.c -o Partition/cholmod_l_nesdis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Supernodal/cholmod_super_numeric.c -o Supernodal/cholmod_super_numeric.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Supernodal/cholmod_l_super_numeric.c -o Supernodal/cholmod_l_super_numeric.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Supernodal/cholmod_super_solve.c -o Supernodal/cholmod_super_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Supernodal/cholmod_l_super_solve.c -o Supernodal/cholmod_l_super_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Supernodal/cholmod_super_symbolic.c -o Supernodal/cholmod_super_symbolic.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -DNPRINT -DNTIMER -g -O2 -fPIC -c Supernodal/cholmod_l_super_symbolic.c -o Supernodal/cholmod_l_super_symbolic.o rm -f CHOLMOD.a ar -cr CHOLMOD.a Check/cholmod_check.o Check/cholmod_l_check.o Check/cholmod_read.o Check/cholmod_l_read.o Check/cholmod_write.o Check/cholmod_l_write.o Cholesky/cholmod_amd.o Cholesky/cholmod_l_amd.o Cholesky/cholmod_analyze.o Cholesky/cholmod_l_analyze.o Cholesky/cholmod_colamd.o Cholesky/cholmod_l_colamd.o Cholesky/cholmod_etree.o Cholesky/cholmod_l_etree.o Cholesky/cholmod_factorize.o Cholesky/cholmod_l_factorize.o Cholesky/cholmod_postorder.o Cholesky/cholmod_l_postorder.o Cholesky/cholmod_rcond.o Cholesky/cholmod_l_rcond.o Cholesky/cholmod_resymbol.o Cholesky/cholmod_l_resymbol.o Cholesky/cholmod_rowcolcounts.o Cholesky/cholmod_l_rowcolcounts.o Cholesky/cholmod_rowfac.o Cholesky/cholmod_l_rowfac.o Cholesky/cholmod_solve.o Cholesky/cholmod_l_solve.o Cholesky/cholmod_spsolve.o Cholesky/cholmod_l_spsolve.o Utility/cholmod_aat.o Utility/cholmod_l_aat.o Utility/cholmod_add.o Utility/cholmod_l_add.o Utility/cholmod_add_size_t.o Utility/cholmod_l_add_size_t.o Utility/cholmod_alloc_factor.o Utility/cholmod_l_alloc_factor.o Utility/cholmod_alloc_work.o Utility/cholmod_l_alloc_work.o Utility/cholmod_allocate_dense.o Utility/cholmod_l_allocate_dense.o Utility/cholmod_allocate_factor.o Utility/cholmod_l_allocate_factor.o Utility/cholmod_allocate_sparse.o Utility/cholmod_l_allocate_sparse.o Utility/cholmod_allocate_triplet.o Utility/cholmod_l_allocate_triplet.o Utility/cholmod_allocate_work.o Utility/cholmod_l_allocate_work.o Utility/cholmod_band.o Utility/cholmod_l_band.o Utility/cholmod_band_nnz.o Utility/cholmod_l_band_nnz.o Utility/cholmod_calloc.o Utility/cholmod_l_calloc.o Utility/cholmod_change_factor.o Utility/cholmod_l_change_factor.o Utility/cholmod_clear_flag.o Utility/cholmod_l_clear_flag.o Utility/cholmod_copy.o Utility/cholmod_l_copy.o Utility/cholmod_copy_dense.o Utility/cholmod_l_copy_dense.o Utility/cholmod_copy_dense2.o Utility/cholmod_l_copy_dense2.o Utility/cholmod_copy_factor.o Utility/cholmod_l_copy_factor.o Utility/cholmod_copy_sparse.o Utility/cholmod_l_copy_sparse.o Utility/cholmod_copy_triplet.o Utility/cholmod_l_copy_triplet.o Utility/cholmod_cumsum.o Utility/cholmod_l_cumsum.o Utility/cholmod_dbound.o Utility/cholmod_l_dbound.o Utility/cholmod_defaults.o Utility/cholmod_l_defaults.o Utility/cholmod_dense_nnz.o Utility/cholmod_l_dense_nnz.o Utility/cholmod_dense_to_sparse.o Utility/cholmod_l_dense_to_sparse.o Utility/cholmod_divcomplex.o Utility/cholmod_l_divcomplex.o Utility/cholmod_ensure_dense.o Utility/cholmod_l_ensure_dense.o Utility/cholmod_error.o Utility/cholmod_l_error.o Utility/cholmod_eye.o Utility/cholmod_l_eye.o Utility/cholmod_factor_to_sparse.o Utility/cholmod_l_factor_to_sparse.o Utility/cholmod_finish.o Utility/cholmod_l_finish.o Utility/cholmod_free.o Utility/cholmod_l_free.o Utility/cholmod_free_dense.o Utility/cholmod_l_free_dense.o Utility/cholmod_free_factor.o Utility/cholmod_l_free_factor.o Utility/cholmod_free_sparse.o Utility/cholmod_l_free_sparse.o Utility/cholmod_free_triplet.o Utility/cholmod_l_free_triplet.o Utility/cholmod_free_work.o Utility/cholmod_l_free_work.o Utility/cholmod_hypot.o Utility/cholmod_l_hypot.o Utility/cholmod_malloc.o Utility/cholmod_l_malloc.o Utility/cholmod_maxrank.o Utility/cholmod_l_maxrank.o Utility/cholmod_memdebug.o Utility/cholmod_mult_size_t.o Utility/cholmod_l_mult_size_t.o Utility/cholmod_mult_uint64_t.o Utility/cholmod_nnz.o Utility/cholmod_l_nnz.o Utility/cholmod_ones.o Utility/cholmod_l_ones.o Utility/cholmod_pack_factor.o Utility/cholmod_l_pack_factor.o Utility/cholmod_ptranspose.o Utility/cholmod_l_ptranspose.o Utility/cholmod_realloc.o Utility/cholmod_l_realloc.o Utility/cholmod_realloc_multiple.o Utility/cholmod_l_realloc_multiple.o Utility/cholmod_reallocate_column.o Utility/cholmod_l_reallocate_column.o Utility/cholmod_reallocate_factor.o Utility/cholmod_l_reallocate_factor.o Utility/cholmod_reallocate_sparse.o Utility/cholmod_l_reallocate_sparse.o Utility/cholmod_reallocate_triplet.o Utility/cholmod_l_reallocate_triplet.o Utility/cholmod_sbound.o Utility/cholmod_l_sbound.o Utility/cholmod_score_comp.o Utility/cholmod_l_score_comp.o Utility/cholmod_set_empty.o Utility/cholmod_l_set_empty.o Utility/cholmod_sort.o Utility/cholmod_l_sort.o Utility/cholmod_sparse_to_dense.o Utility/cholmod_l_sparse_to_dense.o Utility/cholmod_sparse_to_triplet.o Utility/cholmod_l_sparse_to_triplet.o Utility/cholmod_speye.o Utility/cholmod_l_speye.o Utility/cholmod_spzeros.o Utility/cholmod_l_spzeros.o Utility/cholmod_start.o Utility/cholmod_l_start.o Utility/cholmod_transpose.o Utility/cholmod_l_transpose.o Utility/cholmod_transpose_sym.o Utility/cholmod_l_transpose_sym.o Utility/cholmod_transpose_unsym.o Utility/cholmod_l_transpose_unsym.o Utility/cholmod_triplet_to_sparse.o Utility/cholmod_l_triplet_to_sparse.o Utility/cholmod_version.o Utility/cholmod_l_version.o Utility/cholmod_xtype.o Utility/cholmod_l_xtype.o Utility/cholmod_zeros.o Utility/cholmod_l_zeros.o MatrixOps/cholmod_drop.o MatrixOps/cholmod_l_drop.o MatrixOps/cholmod_horzcat.o MatrixOps/cholmod_l_horzcat.o MatrixOps/cholmod_norm.o MatrixOps/cholmod_l_norm.o MatrixOps/cholmod_scale.o MatrixOps/cholmod_l_scale.o MatrixOps/cholmod_sdmult.o MatrixOps/cholmod_l_sdmult.o MatrixOps/cholmod_ssmult.o MatrixOps/cholmod_l_ssmult.o MatrixOps/cholmod_submatrix.o MatrixOps/cholmod_l_submatrix.o MatrixOps/cholmod_symmetry.o MatrixOps/cholmod_l_symmetry.o MatrixOps/cholmod_vertcat.o MatrixOps/cholmod_l_vertcat.o Modify/cholmod_rowadd.o Modify/cholmod_l_rowadd.o Modify/cholmod_rowdel.o Modify/cholmod_l_rowdel.o Modify/cholmod_updown.o Modify/cholmod_l_updown.o Partition/cholmod_camd.o Partition/cholmod_l_camd.o Partition/cholmod_ccolamd.o Partition/cholmod_l_ccolamd.o Partition/cholmod_csymamd.o Partition/cholmod_l_csymamd.o Partition/cholmod_metis.o Partition/cholmod_l_metis.o Partition/cholmod_metis_wrapper.o Partition/cholmod_nesdis.o Partition/cholmod_l_nesdis.o Supernodal/cholmod_super_numeric.o Supernodal/cholmod_l_super_numeric.o Supernodal/cholmod_super_solve.o Supernodal/cholmod_l_super_solve.o Supernodal/cholmod_super_symbolic.o Supernodal/cholmod_l_super_symbolic.o /Library/Developer/CommandLineTools/usr/bin/ranlib: file: CHOLMOD.a(cholmod_memdebug.o) has no symbols ranlib CHOLMOD.a /Library/Developer/CommandLineTools/usr/bin/ranlib: file: CHOLMOD.a(cholmod_memdebug.o) has no symbols gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o Matrix.so Csparse.o attrib.o bind.o cholmod-common.o cholmod-etc.o coerce.o cs-etc.o dense.o determinant.o expm.o factor.o idz.o init.o kappa.o matmult.o objects.o perm.o solve.o sparse.o subassign.o subscript.o utils-R.o utils.o validity.o vector.o SuiteSparse/CHOLMOD/CHOLMOD.a SuiteSparse/CCOLAMD/CCOLAMD.a SuiteSparse/CAMD/CAMD.a SuiteSparse/COLAMD/COLAMD.a SuiteSparse/AMD/AMD.a SuiteSparse/CXSparse/CXSparse.a SuiteSparse/SuiteSparse_config/SuiteSparse_config.a -L/Users/pd/r-devel/BUILD-dist/lib -lRlapack -L/Users/pd/r-devel/BUILD-dist/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csc","RsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.coo","RsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","sparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","sparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","sparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"Matrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"Matrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"Matrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"graphAM","TsparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","RsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","TsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","sparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"Matrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"Matrix","graph"': no definition for class "graph" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.X' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from 'stats' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) begin installing recommended package survival begin installing recommended package mgcv * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agexact.c -o agexact.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agfit4.c -o agfit4.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agfit5.c -o agfit5.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agmart.c -o agmart.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agmart3.c -o agmart3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agscore2.c -o agscore2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agscore3.c -o agscore3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agsurv4.c -o agsurv4.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c agsurv5.c -o agsurv5.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c cdecomp.c -o cdecomp.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c chinv2.c -o chinv2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c chinv3.c -o chinv3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c cholesky2.c -o cholesky2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c cholesky3.c -o cholesky3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c cholesky5.c -o cholesky5.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c chsolve2.c -o chsolve2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c chsolve3.c -o chsolve3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c chsolve5.c -o chsolve5.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c collapse.c -o collapse.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c concordance1.c -o concordance1.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c concordance3.c -o concordance3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c concordance5.c -o concordance5.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c cox_Rcallback.c -o cox_Rcallback.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxcount1.c -o coxcount1.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxdetail.c -o coxdetail.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxexact.c -o coxexact.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxfit5.c -o coxfit5.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxfit6.c -o coxfit6.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxmart.c -o coxmart.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxmart2.c -o coxmart2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxph_wtest.c -o coxph_wtest.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxsafe.c -o coxsafe.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxscho.c -o coxscho.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxscore2.c -o coxscore2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxsurv1.c -o coxsurv1.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxsurv2.c -o coxsurv2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxsurv3.c -o coxsurv3.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxsurv4.c -o coxsurv4.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c dmatrix.c -o dmatrix.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c doloop.c -o doloop.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c fastkm.c -o fastkm.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c finegray.c -o finegray.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c gchol.c -o gchol.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c multicheck.c -o multicheck.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c norisk.c -o norisk.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pyears1.c -o pyears1.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pyears2.c -o pyears2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pyears3b.c -o pyears3b.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c pystep.c -o pystep.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c residcsum.c -o residcsum.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survConcordance.c -o survConcordance.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survdiff2.c -o survdiff2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survfit4.c -o survfit4.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survfitaj.c -o survfitaj.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survfitkm.c -o survfitkm.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survfitresid.c -o survfitresid.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survpenal.c -o survpenal.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survreg6.c -o survreg6.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survreg7.c -o survreg7.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survregc1.c -o survregc1.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survregc2.c -o survregc2.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c survsplit.c -o survsplit.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c tmerge.c -o tmerge.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c twoclust.c -o twoclust.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c zph1.c -o zph1.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c zph2.c -o zph2.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'Apple clang version 14.0.0 (clang-1400.0.29.202)' using SDK: 'MacOSX13.1.sdk' gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c coxph.c -o coxph.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c davies.c -o davies.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c discrete.c -o discrete.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c gdi.c -o gdi.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c magic.c -o magic.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c mat.c -o mat.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c matrix.c -o matrix.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c mgcv.c -o mgcv.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c misc.c -o misc.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c mvn.c -o mvn.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c ncv.c -o ncv.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c qp.c -o qp.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c soap.c -o soap.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sparse-smooth.c -o sparse-smooth.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sparse.c -o sparse.o gcc -I"/Users/pd/r-devel/BUILD-dist/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c tprs.c -o tprs.o gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/lib -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -L/Users/pd/r-devel/BUILD-dist/lib -lRlapack -L/Users/pd/r-devel/BUILD-dist/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/pd/r-devel/BUILD-dist/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) + cd ../R + svn commit -m 'maintainer-mode changes' + make dist SVN-REVISION is unchanged make[1]: Nothing to be done for `front-matter'. make[1]: Nothing to be done for `html-non-svn'. make[1]: Nothing to be done for `R'. make[1]: Nothing to be done for `R'. make[2]: Nothing to be done for `R'. make[3]: Nothing to be done for `R'. make[4]: `libRblas.dylib' is up to date. /Users/pd/r-devel/BUILD-dist/lib/libRblas.dylib is unchanged make[4]: `libxdr.a' is up to date. ../../../src/include/libintl.h is unchanged ../../../include/libintl.h is unchanged make[4]: `charsetalias.h' is up to date. make[4]: `Makedeps' is up to date. make[4]: `libintl.a' is up to date. make[4]: `Makedeps' is up to date. make[4]: `libtre.a' is up to date. make[4]: `Makedeps' is up to date. make[4]: `libtz.a' is up to date. make[3]: `libappl.a' is up to date. make[3]: `libnmath.a' is up to date. make[3]: `libunix.a' is up to date. gcc -I. -I../../src/include -I../../../R/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -L/usr/local/lib -DR_HOME='"/Users/pd/r-devel/BUILD-dist"' \ -o Rscript ../../../R/src/unix/Rscript.c /Users/pd/r-devel/BUILD-dist/bin/exec/R is unchanged make[4]: `internet.so' is up to date. make[4]: `libRlapack.dylib' is up to date. /Users/pd/r-devel/BUILD-dist/lib/libRlapack.dylib is unchanged make[4]: `lapack.so' is up to date. make[4]: `R_X11.so' is up to date. make[4]: `R_de.so' is up to date. /Users/pd/r-devel/BUILD-dist/modules/R_X11.so is unchanged /Users/pd/r-devel/BUILD-dist/modules/R_de.so is unchanged building system startup profile building package 'translations' building package 'base' all.R is unchanged building package 'tools' all.R is unchanged make[4]: `../../../library/tools/wre.txt' is up to date. ../../../../library/tools/libs/tools.so is unchanged installing 'sysdata.rda' building package 'compiler' all.R is unchanged make[4]: Nothing to be done for `mklazycomp'. make[3]: Nothing to be done for `mklazycomp'. make[3]: Nothing to be done for `mklazycomp'. building package 'utils' all.R is unchanged make[4]: Nothing to be done for `iconvlist'. ../../../../library/utils/libs/utils.so is unchanged installing 'sysdata.rda' make[4]: Nothing to be done for `mklazycomp'. building package 'grDevices' all.R is unchanged ../../../../library/grDevices/libs/grDevices.so is unchanged make[9]: `cairo.so' is up to date. make[4]: Nothing to be done for `mklazycomp'. building package 'graphics' all.R is unchanged ../../../../library/graphics/libs/graphics.so is unchanged make[4]: Nothing to be done for `mklazycomp'. building package 'stats' all.R is unchanged ../../../../library/stats/libs/stats.so is unchanged make[4]: Nothing to be done for `mklazycomp'. building package 'datasets' building package 'methods' all.R is unchanged ../../../../library/methods/libs/methods.so is unchanged make[4]: Nothing to be done for `RfilesLazy'. building package 'grid' all.R is unchanged ../../../../library/grid/libs/grid.so is unchanged make[4]: Nothing to be done for `mklazycomp'. building package 'splines' all.R is unchanged ../../../../library/splines/libs/splines.so is unchanged make[4]: Nothing to be done for `mklazycomp'. building package 'stats4' all.R is unchanged make[4]: Nothing to be done for `mklazycomp'. building package 'tcltk' all.R is unchanged ../../../../library/tcltk/libs/tcltk.so is unchanged make[4]: Nothing to be done for `mklazycomp'. building package 'parallel' all.R is unchanged ../../../../library/parallel/libs/parallel.so is unchanged make[4]: Nothing to be done for `mklazycomp'. installing parsed NAMESPACE files make[1]: Nothing to be done for `R'. building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... building/updating vignettes for package 'stats' ... config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile chmod -R a+r R-4.5.0 chmod -R go-w R-4.5.0 distname=`../R/tools/GETDISTNAME`; \ dirname=`echo ${distname} | sed -e s/_.*//`; \ if test R-4.5.0 != ${dirname} ; then \ mv R-4.5.0 ${dirname}; \ fi ; \ rm -f ${distname}.tar.gz; \ /usr/bin/tar cf ${distname}.tar ${dirname} && /usr/bin/gzip --best ${distname}.tar; \ rm -Rf ${dirname} ++ echo R-devel_2024-07-15_r86902.tar.gz + RNOW=R-devel_2024-07-15_r86902.tar.gz + cp R-devel_2024-07-15_r86902.tar.gz /Users/pd/R-pre ++ basename -s .gz R-devel_2024-07-15_r86902.tar.gz + RNOWBASE=R-devel_2024-07-15_r86902.tar + RNOWXZ=R-devel_2024-07-15_r86902.tar.xz + gunzip -c R-devel_2024-07-15_r86902.tar.gz + xz -9e + cp R-devel_2024-07-15_r86902.tar.xz /Users/pd/R-pre + ln -sf R-devel_2024-07-15_r86902.tar.gz /Users/pd/R-pre/R-devel.tar.gz + ln -sf R-devel_2024-07-15_r86902.tar.xz /Users/pd/R-pre/R-devel.tar.xz + find /Users/pd/R-pre -name 'R-devel_*.gz' -mmin +10000 -exec rm '{}' ';' + find /Users/pd/R-pre -name 'R-devel_*.xz' -mmin +10000 -exec rm '{}' ';' + rsync -aOvuz --no-p /Users/pd/R-pre/ cran.r-project.org:/srv/ftp/pub/R/src/base-prerelease building file list ... done R-devel_2024-07-15_r86902.tar.gz R-devel_2024-07-15_r86902.tar.xz