* using log directory 'd:/Rcompile/CRANpkg/local/4.3/bullseye.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bullseye/DESCRIPTION' ... OK * this is package 'bullseye' version '0.1.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bullseye' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] NOTE pairwise.matrix: no visible global function definition for '%||%' Undefined global functions or variables: %||% * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] ERROR Running examples in 'bullseye-Ex.R' failed The error most likely occurred in: > ### Name: pair_ace > ### Title: Alternating conditional expectations correlation > ### Aliases: pair_ace > > ### ** Examples > > pair_ace(iris) Error in rownames(m) %||% paste0("V", seq_along(xindex)) : could not find function "%||%" Calls: pair_ace -> pairwise -> pairwise.data.frame -> pairwise.matrix Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [8s] ERROR Running 'testthat.R' [8s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(bullseye) > > test_check("bullseye") [ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-pair_methods.R:3:3'): pair cor ───────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_cor(iris[c(1, 2, 51, 52, 53), ]) at test-pair_methods.R:3:3 2. ├─bullseye::pairwise(dcor, score = method, pair_type = "nn") 3. └─bullseye:::pairwise.matrix(dcor, score = method, pair_type = "nn") ── Error ('test-pair_methods.R:9:3'): pair cancor ────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_cancor(iris[1:4, ]) at test-pair_methods.R:9:3 2. ├─bullseye::pairwise(d, score = "cancor") 3. └─bullseye:::pairwise.data.frame(d, score = "cancor") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:16:5'): pair dcor ─────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_dcor(iris[1:4, ]) at test-pair_methods.R:16:5 2. ├─bullseye::pairwise(d, score = "dcor", pair_type = "nn") 3. └─bullseye:::pairwise.data.frame(d, score = "dcor", pair_type = "nn") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:24:3'): pair mine ─────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_mine(iris[c(1, 2, 51, 52, 53), ]) at test-pair_methods.R:24:3 2. ├─bullseye::pairwise(...) 3. └─bullseye:::pairwise.matrix(...) ── Error ('test-pair_methods.R:31:3'): pair nmi ──────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_nmi(iris[1:4, ]) at test-pair_methods.R:31:3 2. ├─bullseye::pairwise(d, score = "nmi") 3. └─bullseye:::pairwise.data.frame(d, score = "nmi") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:39:3'): pair polychor ─────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_polychor(droplevels(iris1)) at test-pair_methods.R:39:3 2. ├─bullseye::pairwise(d, score = "polychor", pair_type = "ff") 3. └─bullseye:::pairwise.data.frame(d, score = "polychor", pair_type = "ff") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:47:3'): pair polyserial ───────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_polyserial(droplevels(iris1)) at test-pair_methods.R:47:3 2. ├─bullseye::pairwise(d, score = "polyserial") 3. └─bullseye:::pairwise.data.frame(d, score = "polyserial") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:57:3'): pair tau ──────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_tauB(iris1) at test-pair_methods.R:57:3 2. └─bullseye:::pair_tau(d, method = "B", ...) 3. ├─bullseye::pairwise(d, score = paste0("tau", method), pair_type = "ff") 4. └─bullseye:::pairwise.data.frame(...) 5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:76:3'): pair uncertainty ──────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_uncertainty(droplevels(iris1)) at test-pair_methods.R:76:3 2. ├─bullseye::pairwise(d, score = "uncertainty", pair_type = "ff") 3. └─bullseye:::pairwise.data.frame(d, score = "uncertainty", pair_type = "ff") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:85:3'): pair gkTau ────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_gkTau(droplevels(iris1)) at test-pair_methods.R:85:3 2. ├─bullseye::pairwise(d, score = "gkTau", pair_type = "ff") 3. └─bullseye:::pairwise.data.frame(d, score = "gkTau", pair_type = "ff") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:95:3'): pair gkGamma ──────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_gkGamma(droplevels(iris1)) at test-pair_methods.R:95:3 2. ├─bullseye::pairwise(d, score = "gkGamma", pair_type = "ff") 3. └─bullseye:::pairwise.data.frame(d, score = "gkGamma", pair_type = "ff") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:104:3'): pair chi ─────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_chi(droplevels(iris1)) at test-pair_methods.R:104:3 2. ├─bullseye::pairwise(d, score = "chi", pair_type = "ff") 3. └─bullseye:::pairwise.data.frame(d, score = "chi", pair_type = "ff") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:111:3'): pair ace ─────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_ace(iris[c(1, 2, 53, 55), ]) at test-pair_methods.R:111:3 2. ├─bullseye::pairwise(d, score = "ace") 3. └─bullseye:::pairwise.data.frame(d, score = "ace") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_methods.R:118:3'): pair multi ───────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pairwise_multi(iris, scores = c("pair_cor", "pair_cancor")) at test-pair_methods.R:118:3 2. ├─base::do.call(what = get(scores[i]), args = list(d = d, handle.na = handle.na)) 3. └─bullseye (local) ``(d = ``, handle.na = TRUE) 4. ├─bullseye::pairwise(dcor, score = method, pair_type = "nn") 5. └─bullseye:::pairwise.matrix(dcor, score = method, pair_type = "nn") ── Error ('test-pair_scagnostics.R:4:3'): pair scagnostics ───────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pair_scagnostics(...) at test-pair_scagnostics.R:4:3 2. ├─bullseye::pairwise(d, score = sel_scag[1], pair_type = "nn") 3. └─bullseye:::pairwise.data.frame(d, score = sel_scag[1], pair_type = "nn") 4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pair_scores.R:5:3'): pairwise scores ─────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. └─bullseye::pairwise_scores(iris[c(1, 2, 53, 55), ]) at test-pair_scores.R:5:3 2. ├─base::do.call(get(entry$funName), list(dsub, handle.na = handle.na)) 3. └─bullseye (local) ``(``, handle.na = TRUE) 4. ├─bullseye::pairwise(d, score = "cancor") 5. └─bullseye:::pairwise.data.frame(d, score = "cancor") 6. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pairwise.R:4:3'): pairwise ───────────────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. ├─bullseye::pairwise(iris[, 1:4]) at test-pairwise.R:4:3 2. └─bullseye:::pairwise.data.frame(iris[, 1:4]) 3. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-pairwise.R:10:3'): pairwise from matrix ──────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. ├─bullseye::pairwise(cor(iris[, 1:4])) at test-pairwise.R:10:3 2. └─bullseye:::pairwise.matrix(cor(iris[, 1:4])) ── Error ('test-plot_pairwise.R:4:3'): plot pairwise ─────────────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. ├─bullseye::plot_pairwise(pairwise(iris[1:4, ])) at test-plot_pairwise.R:4:3 2. │ └─bullseye:::check_pairwise(scores) 3. ├─bullseye::pairwise(iris[1:4, ]) 4. └─bullseye:::pairwise.data.frame(iris[1:4, ]) 5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) ── Error ('test-plot_pairwise.R:9:3'): plot pairwise linear ──────────────────── Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%" Backtrace: ▆ 1. ├─bullseye::plot_pairwise_linear(pairwise(iris[1:4, ])) at test-plot_pairwise.R:9:3 2. │ └─bullseye:::check_pairwise(scores) 3. ├─bullseye::pairwise(iris[1:4, ]) 4. └─bullseye:::pairwise.data.frame(iris[1:4, ]) 5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type) [ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [9s] ERROR Error(s) in re-building vignettes: --- re-building 'calc_pairwise.Rmd' using rmarkdown Quitting from lines 44-46 [unnamed-chunk-3] (calc_pairwise.Rmd) Error: processing vignette 'calc_pairwise.Rmd' failed with diagnostics: could not find function "%||%" --- failed re-building 'calc_pairwise.Rmd' --- re-building 'integrating.Rmd' using rmarkdown Quitting from lines 57-62 [corrplot_assoc] (integrating.Rmd) Error: processing vignette 'integrating.Rmd' failed with diagnostics: could not find function "%||%" --- failed re-building 'integrating.Rmd' --- re-building 'vis_pairwise.Rmd' using rmarkdown Quitting from lines 52-53 [unnamed-chunk-3] (vis_pairwise.Rmd) Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics: could not find function "%||%" --- failed re-building 'vis_pairwise.Rmd' SUMMARY: processing the following files failed: 'calc_pairwise.Rmd' 'integrating.Rmd' 'vis_pairwise.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [18s] OK * checking HTML version of manual ... [6s] OK * DONE Status: 3 ERRORs, 1 NOTE