* using log directory 'd:/Rcompile/CRANpkg/local/4.3/eudract.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'eudract/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'eudract' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'eudract' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [3s] ERROR
Running examples in 'eudract-Ex.R' failed
The error most likely occurred in:

> ### Name: clintrials_gov_upload
> ### Title: applies a conversion using xslt from a simple xml file to a
> ###   ClinicalTrials.gov compatible file, merges into a study record from
> ###   the portal, and uploads the result.
> ### Aliases: clintrials_gov_upload
> 
> ### ** Examples
> 
> safety_statistics <- safety_summary(safety,
+                                     exposed=c("Experimental"=60,"Control"=67))
> simple <- tempfile(fileext = ".xml")
> eudract <- tempfile(fileext = ".xml")
> ct <- tempfile(fileext = ".xml")
> simple_safety_xml(safety_statistics, simple)
'D:\temp\2024_12_20_01_50_00_19051\RtmpkvEq8N\file27fb8c22454.xml' is created or modified

> eudract_convert(input=simple,
+                 output=eudract)
'D:\temp\2024_12_20_01_50_00_19051\RtmpkvEq8N\file27fb83b7f1266.xml' is created or modified

Please email cuh.cctu@nhs.net to tell us if you have successfully uploaded a study to EudraCT.
This is to allow us to measure the impact of this tool.
> clintrials_gov_convert(input=simple,
+                        original=system.file("extdata", "1234.xml", package ="eudract"),
+                 output=ct)
'D:\temp\2024_12_20_01_50_00_19051\RtmpkvEq8N\file27fb8456e3e50.xml' is created or modified

Please email cuh.cctu@nhs.net to tell us if you have successfully uploaded a study to ClinicalTrials.gov .
This is to allow us to measure the impact of this tool.
> ## Not run: 
> ##D   # This needs a real user account to work
> ##D   clintrials_gov_upload(
> ##D     input=simple,
> ##D     orgname="CTU",
> ##D     username="Student",
> ##D     password="Guinness",
> ##D     studyid="1234"
> ##D     )
> ##D 
> ## End(Not run)
> 
> 
> 
> cleanEx()
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [3s] ERROR
  Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(eudract)
  > 
  > test_check("eudract")
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [11s] ERROR
Error(s) in re-building vignettes:
--- re-building 'eudract.Rmd' using rmarkdown
--- re-building 'standard_reporting.Rmd' using rmarkdown
--- finished re-building 'standard_reporting.Rmd'

SUMMARY: processing the following file failed:
  'eudract.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 3 ERRORs