* using log directory 'd:/Rcompile/CRANpkg/local/4.4/bayesMeanScale.Rcheck' * using R version 4.4.0 (2024-04-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bayesMeanScale/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'bayesMeanScale' version '0.1.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bayesMeanScale' can be installed ... WARNING Found the following significant warnings: Warning: namespace 'rstan' is not available and has been replaced Warning: namespace 'rstanarm' is not available and has been replaced See 'd:/Rcompile/CRANpkg/local/4.4/bayesMeanScale.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [1s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [10s] ERROR Running 'testthat.R' [10s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(bayesMeanScale) > > test_check("bayesMeanScale") Loading required package: rstan Loading required package: StanHeaders rstan version 2.32.6 (Stan version 2.32.2) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()). To avoid recompilation of unchanged Stan programs, we recommend calling rstan_options(auto_write = TRUE) For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions, change `threads_per_chain` option: rstan_options(threads_per_chain = 1) Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file [ FAIL 1 | WARN 0 | SKIP 16 | PASS 7 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • On CRAN (16): 'test-bayes-count-marg-effects.R:5:3', 'test-bayes-count-marg-effects.R:25:3', 'test-bayes-count-preds.R:5:3', 'test-bayes-count-preds.R:25:3', 'test-bayes-preds.R:5:3', 'test-bayes-preds.R:19:3', 'test-count-marg-effect-error-check.R:5:3', 'test-count-preds-error-check.R:5:3', 'test-marg-compare-error-check.R:5:3', 'test-marg-compare.R:5:3', 'test-marg-effects-error-check.R:5:3', 'test-marg-effects.R:5:3', 'test-marg-effects.R:19:3', 'test-marg-effects.R:33:3', 'test-new-value.R:5:3', 'test-preds-error-check.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bayes-count-preds.R:45:1'): (code run outside of `test_that()`) ── Error: All variables in all chains must have the same length. Backtrace: ▆ 1. ├─... %>% subset(., select = c(mean)) at test-bayes-count-preds.R:45:1 2. ├─base::subset(., select = c(mean)) 3. └─bayesMeanScale::bayesCountPredsF(...) 4. ├─base::sample(...) 5. ├─base::nrow(posterior::as_draws_df(model)) 6. ├─posterior::as_draws_df(model) 7. └─posterior:::as_draws_df.default(model) 8. ├─posterior::as_draws(x) 9. └─posterior:::as_draws.default(x) 10. └─posterior (local) fun(x, ...) 11. └─posterior:::stop_no_call("All variables in all chains must have the same length.") [ FAIL 1 | WARN 0 | SKIP 16 | PASS 7 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [89s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 1 ERROR, 1 WARNING