* using log directory 'd:/Rcompile/CRANpkg/local/4.4/PANPRSnext.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'PANPRSnext/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'PANPRSnext' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PANPRSnext' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 13.2.0' * checking C++ specification ... OK Not all R platforms support C++17 * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking examples ... [1s] ERROR Running examples in 'PANPRSnext-Ex.R' failed The error most likely occurred in: > ### Name: gsfPEN_R > ### Title: Run the gsfPEN algorithm for multiple traits, with functional > ### annotations. > ### Aliases: gsfPEN_R > > ### ** Examples > > # Load the library and data > library(PANPRSnext) > data("summaryZ") > data("Nvec") > data("plinkLD") > data("funcIndex") > > # Take random subset of the data > subset <- sample(nrow(summaryZ), 100) > subset_summary_z <- summaryZ[subset, ] > subset_func_index <- funcIndex[subset, ] > > # Run gsfPEN > output <- gsfPEN_R( + summary_z = subset_summary_z, + n_vec = Nvec, + plinkLD = plinkLD, + func_index = subset_func_index + ) Error: element-wise multiplication: incompatible matrix dimensions: 1x3 and 3x1 Execution halted * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [2s] OK * DONE Status: 1 ERROR