nlminb {stats}R Documentation

Optimization using PORT routines

Description

Unconstrained and box-constrained optimization using PORT routines.

For historical compatibility.

Usage

nlminb(start, objective, gradient = NULL, hessian = NULL, ...,
       scale = 1, control = list(), lower = -Inf, upper = Inf)

Arguments

start

numeric vector, initial values for the parameters to be optimized.

objective

Function to be minimized. Must return a scalar value. The first argument to objective is the vector of parameters to be optimized, whose initial values are supplied through start. Further arguments (fixed during the course of the optimization) to objective may be specified as well (see ...).

gradient

Optional function that takes the same arguments as objective and evaluates the gradient of objective at its first argument. Must return a vector as long as start.

hessian

Optional function that takes the same arguments as objective and evaluates the hessian of objective at its first argument. Must return a square matrix of order length(start). Only the lower triangle is used.

...

Further arguments to be supplied to objective.

scale

See PORT documentation (or leave alone).

control

A list of control parameters. See below for details.

lower, upper

vectors of lower and upper bounds, replicated to be as long as start. If unspecified, all parameters are assumed to be unconstrained.

Details

Any names of start are passed on to objective and where applicable, gradient and hessian. The parameter vector will be coerced to double.

The PORT documentation is at http://netlib.bell-labs.com/cm/cs/cstr/153.pdf.

The parameter vector passed to objective, gradient and hessian has special semantics and is shared between calls. The functions should not copy it.

If any of the functions returns NA or NaN the internal code could infinite-loop in R prior to 2.15.2: this is now an error for the gradient and Hessian, and such values for function evaluation are replaced by +Inf with a warning.

Value

A list with components:

par

The best set of parameters found.

objective

The value of objective corresponding to par.

convergence

An integer code. 0 indicates successful convergence.

message

A character string giving any additional information returned by the optimizer, or NULL. For details, see PORT documentation.

iterations

Number of iterations performed.

evaluations

Number of objective function and gradient function evaluations

Control parameters

Possible names in the control list and their default values are:

eval.max

Maximum number of evaluations of the objective function allowed. Defaults to 200.

iter.max

Maximum number of iterations allowed. Defaults to 150.

trace

The value of the objective function and the parameters is printed every trace'th iteration. Defaults to 0 which indicates no trace information is to be printed.

abs.tol

Absolute tolerance. Defaults to 0 so the absolute convergence test is not used. If the objective function is known to be non-negative, the previous default of 1e-20 would be more appropriate.

rel.tol

Relative tolerance. Defaults to 1e-10.

x.tol

X tolerance. Defaults to 1.5e-8.

xf.tol

false convergence tolerance. Defaults to 2.2e-14.

step.min, step.max

Minimum and maximum step size. Both default to 1..

sing.tol

singular convergence tolerance; defaults to rel.tol.

scale.init

...

diff.g

an estimated bound on the relative error in the objective function value.

Author(s)

R port: Douglas Bates and Deepayan Sarkar.

Underlying Fortran code by David M. Gay

Source

http://netlib.bell-labs.com/netlib/port/

See Also

optim (which is preferred) and nlm.

optimize for one-dimensional minimization and constrOptim for constrained optimization.

Examples

x <- rnbinom(100, mu = 10, size = 10)
hdev <- function(par)
    -sum(dnbinom(x, mu = par[1], size = par[2], log = TRUE))
nlminb(c(9, 12), hdev)
nlminb(c(20, 20), hdev, lower = 0, upper = Inf)
nlminb(c(20, 20), hdev, lower = 0.001, upper = Inf)

## slightly modified from the S-PLUS help page for nlminb
# this example minimizes a sum of squares with known solution y
sumsq <- function( x, y) {sum((x-y)^2)}
y <- rep(1,5)
x0 <- rnorm(length(y))
nlminb(start = x0, sumsq, y = y)
# now use bounds with a y that has some components outside the bounds
y <- c( 0, 2, 0, -2, 0)
nlminb(start = x0, sumsq, lower = -1, upper = 1, y = y)
# try using the gradient
sumsq.g <- function(x, y) 2*(x-y)
nlminb(start = x0, sumsq, sumsq.g,
       lower = -1, upper = 1, y = y)
# now use the hessian, too
sumsq.h <- function(x, y) diag(2, nrow = length(x))
nlminb(start = x0, sumsq, sumsq.g, sumsq.h,
       lower = -1, upper = 1, y = y)

## Rest lifted from optim help page

fr <- function(x) {   ## Rosenbrock Banana function
    x1 <- x[1]
    x2 <- x[2]
    100 * (x2 - x1 * x1)^2 + (1 - x1)^2
}
grr <- function(x) { ## Gradient of 'fr'
    x1 <- x[1]
    x2 <- x[2]
    c(-400 * x1 * (x2 - x1 * x1) - 2 * (1 - x1),
       200 *      (x2 - x1 * x1))
}
nlminb(c(-1.2,1), fr)
nlminb(c(-1.2,1), fr, grr)


flb <- function(x)
    { p <- length(x); sum(c(1, rep(4, p-1)) * (x - c(1, x[-p])^2)^2) }
## 25-dimensional box constrained
## par[24] is *not* at boundary
nlminb(rep(3, 25), flb, lower = rep(2, 25), upper = rep(4, 25))
## trying to use a too small tolerance:
r <- nlminb(rep(3, 25), flb, control = list(rel.tol = 1e-16))
stopifnot(grepl("rel.tol", r$message))

[Package stats version 2.15.3 Index]