2022-8-25 Yu-Sung Su * DESCRIPTION: (Version, Date): 1.13.1 * NAMESPACE: import solve from Matrix * R/simmer: comment out solveFun(), and use solve from Matrix direclty 2021-10-15 Yu-Sung Su * DESCRIPTION: (Version, Date): 1.12-2 * man/lalonde.Rd: fixed the link to lalonde data (from http to https) 2021-10-08 Marius Barth * DESCRIPTION: (Version, Date): removed the Hmisc package from Imports field * NAMESPACE: Do not import wtd.var from Hmisc, anymore (this is to increase crossplatform compatibility) * R/balance.R: Replace call to Hmisc::wtd.var() with call to stats::cov.wt() 2020-7-27 Yu-Sung Su * DESCRIPTION: (Version, Date): 1.11-2 * NAMESPACE: import weighted.mean from stats and wtd.var from Hmisc * R/balance: new balance, print.balance, plot.balance function * R/matching: new matching function * man/balance: new description to new functions 2020-4-27 Yu-Sung Su * DESCRIPTION: (Version, Date): 1.11-0 * NAMESPACE: import setClass from methods (BUGS reported by Henrik) 2018-4-12 Yu-Sung Su * DESCRIPTION: (Version, Date): 1.10-1 * R/bayesglm: fix a bug where scale=TRUE the prior.scale miscount the nvars. * R/sim.glm: improve the speed. * man/standardized: fix a typo in the example 2016-11-24 Yu-Sung Su * DESCRIPTION: (Version, Date): 1.9-3 * DESCRIPTION: new description, and change http to https in URL 2016-9-4 Yu-Sung Su * DESCRIPTION: add BugReports and change LICENSE to GPL >=3, fix Vincent's name (spelling error, sorry Vincent!) ======= 2016-9-2 Yu-Sung Su * DESCRIPTION: add BugReports and change LICENSE to GPL >=3 * Doc fix Vincent's name 2016-8-21 Yu-Sung Su * DESCRIPTION (Version, Date): 1.9-1 * NAMESPACE: import show from methods 2015-7-7 Yu-Sung Su * DESCRIPTION (Version, Date): 1.8-6 * NAMESPACE: import more from base packages (new R rules) 2015-5-3 Yu-Sung Su * DESCRIPTION (Version, Date): 1.8-5 * R/bayesglm: fix a missing line in the re-factorization of bayesglm.fit, when scaled=TRUE, and a column of X takes on more than two values, than prior.scale = prior.scale /(sd(x)*2). 2015-4-7 Yu-Sung Su * DESCRIPTION (Version, Date): 1.8-4 * R/sigma.hat: sigma.hat changed to S3 function. * R/fitted: changed to S3 function * R/coef: coef, fixef, ranef, changed to S3 function 2015-3-31 Yu-Sung Su * DESCRIPTION (Version, Date): 1.8-03 * R/bayesglm: revert back to a more straightforward coding, easier for debugging. * R/bayespolr: check n.iter to maxit, and pass it through control. 2014-8-27 Yu-Sung Su * DESCRIPTION (Version, Date): 1.7-07 * R/readColumns: add read.columns() * R/sim: fix a bug in the name calling of beta.hat * man/readColumns: add description for read.columns() * NAMESPACE: export read.columns * DESCRIPTION: remove foreign and R2WinBUGS from suggests 2014-8-1 Yu-Sung Su * DESCRIPTION (Version, Date): 1.7-05 (thanks to Dr. Martyn Plummer's contribution) * R/bayesglm: fix several bugs in bayesglm * R/display: change the display for bayesglm to fit the changes stated above. * man/bayesglm: 1. change M2 and M7 example codes to make them equivalent to M1 and M3. 2. change the description for prior.scale for the gaussian family. * DESCRIPTION: remove foreign and R2WinBUGS from suggests 2014-4-27 Yu-Sung Su * DESCRIPTION (Version, Date): 1.7-03 * R/bayesglm: revert back to the use of lm.fit to lm.wfit; put a stop when dispersion goes Inf 2014-4-24 Yu-Sung Su * DESCRIPTION (Version, Date): 1.7-02 * R/simmer.R: simmer attaches names to fixed effects * R/fitted: fitted uses correct observational weights for glmms * R/bayesglm: use change the use of lm.fit to lm.wfit. 2013-11-25 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-10 * make changes that fit to oldrelease R. * R/se.ranef, se.coef: change postVar to condVar 2013-9-23 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-09 * start supporting new lme4 2013-9-23 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-09 * start supporting new lme4 2013-8-22 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-07 * revert back to 1.6-07, stop supporting the new lme4. * R/bayesglm: fix various bugs 2013-8-21 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-08 * clean up DESCRIPTION and NAMESPACE 2013-7-12 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-07 * made various change to adjust the new lme4 * currently, sim.mer is not working, waiting for revision. 2013-5-9 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-06 * NAMESPACE: export new method fitted() for sim.mer * R/fitted: add fitted() for sim.mer object * man/sim: add description for fitted() for sim.mer object * R/bayesglm fix a bug in bayesglm() in "subset" 2013-3-8 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-05 * NAMESPACE: export logit() 2013-2-27 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-04 * R/coefplot: fix a bug when the formula does not have an intercept * man/bayesglm: fix a coding error for weights in the bayesglm.fit 2013-2-20 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-03, add import from survey package * R/AllClass: set old class svyglm. * R/display: add svyglm method * R/coefplot: fix a bug when the formula does not have an intercept * man/display: add svyglm method 2013-1-5 Yu-Sung Su * DESCRIPTION (Version, Date): 1.6-01 * R/bayesglm: fix an issue in updating start in the loop 2012-10-13 Yu-Sung Su * R/coefplot: fix an issue in coefplot. No longer reset par when exit. * R/bayesglm: fix an issue in dev and family$state$valideta, family$state$mu 2012-10-03 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-08 * R/bayesglm: fix various bugs in bayesglm 2012-09-26 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-07 * R/balance: handle the situation when the formula in pscore.fit is not directly express. 2012-09-20 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-06 * R/bayesglm: stop using .Fortran() here. 2012-06-6 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-05 * man/bayesglm: add predictLM * R/bayesglm: add predict.bayesglm, predictLM to fit with model.matrixBayes 2012-04-27 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-04 * man/bayesglm: rewrite the description for the option scaled. 2012-03-3 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-03 * DESCRIPTION: add foreign as the required package * R/simmer: new sim() for mer class 2012-01-19 Yu-Sung Su * DESCRIPTION (Version, Date): 1.5-01 * R/mcsamp: add mcsamp() back, though it is not working. * R/AllGeneric: set coef, print, as generic to pass the check 2011-11-21 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-14 * R/.onAttach: fix the NOTE issue 2011-06-19 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-13 * R/coefplot: fix margin control. 2011-06-11 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-12 * R/bayespolr: add min.prior.scale * R/binnedplot: add nclass > 1 check * man/bayespolr: add min.prior.scale 2011-05-25 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-11 * R/bayesglm: fix a bug when there are some observation-weights that are zero. 2011-05-9 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-10 * R/display: fix a bug in display.lm that fails to print out se. 2011-05-8 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-09 * R/binnedplot: fix a bug of no sd when binnedplot only get one point. 2011-04-24 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-08 * display: now return objects after displaying the fitted model. * sigma.hat: fix a bug in sigma.hat for mer 2011-03-1 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-07 * AllClass: add sim.polr class * coef: add coef() for sim.polr * sim: add sim() for polr 2011-03-1 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-06 * NAMESPACE: export distcrete.histogram 2011-02-23 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-04 * R/binnedplot: pass addition graphical parameters to the function. 2011-02-15 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-03 * R/sim: fix a bug in sim.glm() when there is only an intercept as a predictor. (discovered by Barnes Benjamin) 2011-02-14 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-02 * R/bayesglm: fix some dimension issues when NCOL(x.nobs)==1 2011-02-05 Yu-Sung Su * DESCRIPTION (Version, Date): 1.4-01 * R/load.first: lib --> lib.loc in packageDescription 2010-11-20 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-08 * R/simmer: samples directly from the posterior of the fixed and random effects, given sigma and Sigma 2010-10-24 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-07 add new methods for sim object, coef, fixef, ranef and sigm.hat 2010-9-24 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-06 * R/bayesglm: fix a bug when a model of one predictor with no intercept is fitted * man/several: CRAN no longer alows genericFunction docType 2010-6-28 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-05 * R/extractDIC: add s3 methods for extractDIC and extractAIC for the mer class * Rd/extractDIC 2010-1-21 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-04 * R/standardize: add polr method * Rd/standardize: change the example code to make M1 and M2 equivalent. 2010-1-15 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-03 * R/balanceplot: fix a bug in balance(), take out the intercept 2010-1-11 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-02 * R/bayesglm: new bayesglm.fit (written by Daniel Lee) 2010-1-8 Yu-Sung Su * DESCRIPTION (Version, Date): 1.3-01. * R/bayesglm: a bug in x.matrix augmentation 2009-12-30 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-13. * R/bayesglm: smarter use of x matrix to save memory usage 2009-12-12 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-12. * R/simmer: use of sparse matrix in sim.mer 2009-12-08 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-11; add abind pacakge dependencyR * R/simmer: new sim functions for "mer" class 2009-11-22 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-10. * NAMESPACE: export logit 2009-4-29 Yu-Sung Su * R/display: fix format inconsistency in sprintf (fround) 2009-4-13 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-9. * R/macthing: fix a bug in matching replace=TRUE 2009-3-31 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-8. * R/display: add option detail 2009-3-1 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-7. * R/display: fix a bug in display.mer 2009-2-26 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-6. * R/display: print out t-value, z-value, p-value 2009-2-20 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-5. * R/load.first: no longer set default digit=2 2009-2-17 Yu-Sung Su * NAMESPACE: export binned.resids 2009-2-4 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-4, no longer need car * R/load.first: car is no longer required 2009-2-1 Yu-Sung Su * man/coefplot: fixed doc error * man/sim: fixed doc error 2009-1-30 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-3. * R/coefplot: fixed margin bugs in coefplot.default 2009-1-29 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-2. * R/sim: for mer method, add option ranef. Users choose to return sim.ranef or not. 2009-1-28 Yu-Sung Su * man: first attempt to clean up help files to comply the new rule. in particular, use \dQuote and \sQuote for "" and ''. * man/bayesglm: update reference * man/bayespolr: update reference 2009-1-22 Yu-Sung Su * man/rescale: update reference. * man/standardize: update reference. 2009-1-16 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-1. * NAMESPACE: export S4 method for standardize * man/standardize: add description for S4 methods. * R/AllGeneric: add a generic function for standardize * R/standardize: add standardize.default, S4 methods for lm, glm and mer. 2009-1-03 Yu-Sung Su * DESCRIPTION (Version, Date): 1.2-0.