2021-08-05 Yu-Sung Su * fix various issues suggested by Will Landau 2020-4-27 Yu-Sung Su * DESCRIPTION: add BugReports and change LICENSE to GPL >=3 2016-8-20 Yu-Sung Su * DESCRIPTION (Version, Date): 0.6-1 * R/jagsParalle: add requireNamespace("coda") 2015-8-22 Yu-Sung Su * DESCRIPTION (Version, Date): 0.5-7 * NAMESPACE: add more import * R/jagsParalle: pass data into Glob.env 2015-4-19 Yu-Sung Su * DESCRIPTION (Version, Date): 0.5-5 * DESCRIPTION: SystemRequirements: JAGS (http://mcmc-jags.sourceforge.net) * DESCRIPTION: detailed description about R2jags. 2015-3-5 Yu-Sung Su * man/jags: comment out xyplot and densityplot from example code to avoid from importing lattice library. 2015-1-9 Yu-Sung Su * man/jags: add description for export_obj_name. * R/jagsParallel: add new parameter export_obj_name. Allow users to export other objects to the cluster. 2014-6-19 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-03 * R/jags: add parameters jags.module to handle module to be loaded. 2014-5-30 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-02 * R/jags: update the method for generating Random.seed in jags() * R/jagsParallel: 1. pass envir parameters, now can handle complex data 2. fix a bug when passing model file as a function into jags.parallel() 2014-2-26 Yu-Sung Su * DESCRIPTION (Version, Date): 0.04-01 * R/as.mcmc: fix counter error in update and autoupdate * R/update: fix counter error in update and autoupdate 2014-1-18 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-12 * R/as.mcmc: fix a bug of casuing false convergence when n.chains==1 2013-8-21 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-11 * clean up DESCRIPTION and NAMESPACE, changes are in depends and imports. 2013-8-16 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-10 * R/jags: fix a minor gug in RNGname. 2013-7-14 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-09 * R/jags: users can set RNGname in jags() now. 2012-7-30 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-08 * R/jags: fix inits issue (thanks to Martyn Plummer) 2012-6-30 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-07 * R/as.bugs.array2: fix the code where array() meets dimension = NULL 2012-1-28 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-06.(Thanks to Ben Bolker) * R/jags: 1. alow 4 ways of data input, 2. alow bugs model as an R function. * man/jags: more example code to illustrate the added new features. 2012-1-27 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-05. * R/jags: better way to handle initialization, better use of random.seed * R/jags.parallel: set RNG stream in cluster. 2012-1-25 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-04. * R/AllClass: jags.parallel now contains rjags * R/jags.parallel: 1. add jags.seed so that jags.parallel will start with different inits. 2. now jags.parallel computes DIC * R/update: update for jags.parallel now computes DIC * R/traceplot: now works with jags.parallel 2012-1-22 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-03. * R/AllClass: add rjags.parallel class * R/jags.parallel: fix a bug for not naming the sims.array correctly * R/recompile: add recompile() for the rjags.parallel class * R/update: add update() for the rjags.parallel class 2012-1-12 Yu-Sung Su * DESCRIPTION (Version, Date): 0.03-02. * R/jags.parallel: add new function that runs jags parallely 2011-8-8 Masanao Yajima * DESCRIPTION (Version, Date): 0.02-29. * R/jags: Cleaned up the code. 2011-7-28 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-28. * R/recompile/jags: add end.adaptation=TRUE 2011-7-21 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-16. * R/print: fix a bug that would print out NA when DIC=FALSE 2011-3-30 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-15. * R/print: fix a bug that would print out variable name wrongly 2011-3-17 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-14. * R/print: miscollect sds as means in printout 2011-3-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-13. * R/print: allow output to print with user-specified quantile 2010-12-8 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-11. * man/jags: \dontrun jags2, need to write a function to search for JAGS. 2010-9-28 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-10. * man/traceplot: comment out docType 2010-8-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-09. * man/jags: reactivate dic.samples example. 2010-5-23 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-08. * man/jags: reactivate dic.samples example. 2010-5-18 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-02. * R/jags2: 1. fix a bug in jagsscript. 2. change CODAIndex to CODAindex * R/jags.sim: change CODAIndex to CODAindex 2010-2-3 Yu-Sung Su * DESCRIPTION (Version, Date): 0.02-01. * R/as.bugs.array: fix sims.list permutation * R/jags.sim: fix sims list permutation * R/jags2: fix missing data.list name, this causes read.rjags failure 2009-12-21 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-30. * R/as.bugs.array2: comment out n.burnin=0 in the code. 2009-12-15 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-29. * R/jags: now really allow a data to be a data list. * R/as.mcmc: create new a as.mcmc.rjags method * R/traceplot: reset par(ask) while exiting traceplot 2009-12-14 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-28. * R/autojags: fix a bug in the condtion of checking convergence 2009-11-9 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-27. * R/jags: 1. change the way to specify the working directory. 2. allow data to be list of data object. * R/jags2: 1. change the way to specify the working directory. 2. allow data to be list of data object. 3. coda outputs are now named as CODAchain1 and CODAIndex * R/jags.sim: read coda output as CODAchain1 and CODAIndex 2009-10-12 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-26. * R/jags: get rid of parameter n.sims 2009-8-18 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-25. * add attach.jags and detach.jags functions. 2009-8-6 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-24. * fix a bug in jags.sim and as.bugs.array2 (DIC calculation) thanks to Luwis Diya 2009-5-4 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-23. * fix jags.sim and as.bugs.array2 to be consistent with WinBUGS output (sims.list) 2009-4-13 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-22. * delete the option n.adapt for jags() and incorporate that into n.burnin This is to make jags() more consistent with bugs(). 2009-3-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-21. * pass option "progress.bar" to functions 2009-3-8 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-20. * n.adpate in jags.model now set to 0 but use adapte() to adapte jags.model. 2009-3-7 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-19. * add refresh rate option for the progress bar. 2009-3-4 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-17. * R/as.bugs.array2: provide by Eduardo Leoni to fix dimension problem of jags output. (It is actually the problem of as.bugs.array. JAGS simply returns different dimenstion. So we need new as.bugs.array2 here. Right now, keep it Internal, maybe export later!) 2009-2-23 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-16. * R/jags: nchain --> n.chains (changed by rjags) 2009-2-10 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-15. * R/jags: inits=NULL, let jags gen inits 2009-1-28 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-14. * R/traceplot: add traceplot generic and rjags method * R/jags: fix the bug when n.burnin=0 2008-11-6 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-13. * R/recompile: update set to 100 to ensure complete adaptation 2008-10-17 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-12. * man/recompile: documentation for recompile. * R/recompile: new function to pick up previous saved rjags object. 2008-10-7 Yu-Sung Su * DESCRIPTION (Version, Date): 0.01-11. * R/Allclass: explicitly using setOldClass from methods::: * prepare to release! 2008-8-18 Ben Bolker * DESCRIPTION (Version, Date): 0.01-10. * R/jags: 1. change pos=parent.frame(1) 2. add envir=parent.frame(1) in data dumping 2008-5-7 Yu-Sung Su Masanao Yajima * DESCRIPTION (Version, Date): 0.01-1.