HMPTrees: Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison

In this package, we introduce Object Oriented Data Analysis (OODA) methods to analyze Human Microbiome taxonomic trees directly. We provide tools to model, compare, and visualize populations of taxonomic tree objects.

Version: 1.2
Depends: R (≥ 2.13.0), ape
Suggests: HMP, doParallel
Published: 2013-09-16
Author: Patricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon
Maintainer: Berkley Shands <bshands at dom.wustl.edu>
License: Apache License (== 2.0)
NeedsCompilation: no
Citation: NA
Materials: NA
In views: Phylogenetics
CRAN checks: HMPTrees results

Downloads:

Reference manual: HMPTrees.pdf
Vignettes: Categorical FDA Tutorial
Package source: HMPTrees_1.2.tar.gz
Windows binaries: r-devel: HMPTrees_1.2.zip, r-release: HMPTrees_1.2.zip, r-oldrel: HMPTrees_1.2.zip
OS X Snow Leopard binaries: r-release: HMPTrees_1.2.tgz, r-oldrel: HMPTrees_1.2.tgz
OS X Mavericks binaries: r-release: HMPTrees_1.2.tgz
Old sources: HMPTrees archive