CRAN Package Check Results for Package FunCluster

Last updated on 2014-07-29 05:47:03.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.09 20.19 33.93 54.12 NOTE
r-devel-linux-x86_64-debian-gcc 1.09 20.12 33.72 53.84 NOTE
r-devel-linux-x86_64-fedora-clang 1.09 110.92 NOTE
r-devel-linux-x86_64-fedora-gcc 1.09 107.32 NOTE
r-devel-osx-x86_64-clang 1.09 101.02 NOTE
r-devel-windows-ix86+x86_64 1.09 36.00 49.00 85.00 NOTE
r-patched-linux-x86_64 1.09 19.90 33.02 52.92 NOTE
r-patched-solaris-sparc 1.09 653.20 NOTE
r-patched-solaris-x86 1.09 164.90 NOTE
r-release-linux-ix86 1.09 26.36 44.94 71.29 NOTE
r-release-linux-x86_64 1.09 19.86 33.38 53.24 NOTE
r-release-osx-x86_64-mavericks 1.09 NOTE
r-release-windows-ix86+x86_64 1.09 36.00 51.00 87.00 NOTE
r-oldrel-windows-ix86+x86_64 1.09 37.00 49.00 86.00 NOTE

Check Details

Version: 1.09
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
    File FunCluster/R/FunCluster.R :
     .First.lib calls:
     cat(paste("\nThis is FunCluster package version ", f.version, " maintained by Corneliu Henegar.\n\n", "FunCluster(wd='', org='HS', go.direct=FALSE, clusterm='cc', compare='common.correl.genes',\n", "\tcorr.met='greedy', corr.th=0.85, two.lists=TRUE, restrict=FALSE, alpha=0.05,\n", "\tlocation=FALSE, details=FALSE)\n\n", sep = ""))
    
    Package startup functions should use packageStartupMessage to
     generate messages.
    See section Good practice in '?.onAttach'.
    
    MiseEnFormeKegg: warning in gl(1, NbKmap, label = LL): partial argument
     match of 'label' to 'labels'
    MiseEnFormeKeggSC: warning in gl(1, NbKmap, label = LL): partial
     argument match of 'label' to 'labels'
    prop.alt: warning in matrix(seq(from = adjustment.args$edf.lower, by =
     stepsize, len = adjustment.args$num.steps), nr =
     adjustment.args$num.steps, nc = 1): partial argument match of 'nr' to
     'nrow'
    prop.alt: warning in matrix(seq(from = adjustment.args$edf.lower, by =
     stepsize, len = adjustment.args$num.steps), nr =
     adjustment.args$num.steps, nc = 1): partial argument match of 'nc' to
     'ncol'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.09
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     copying
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc